Gene : TRP1 A. thaliana TAIR10
Primary Identifier:  ? AT5G17990 Defline:  (1 of 1) K00766 - anthranilate phosphoribosyltransferase (trpD)
Genomic Order:  1711 Name:  ? AT5G17990
Secondary Identifier:  ? PAC:19669680
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana TRPSYN-PWY Arabidopsis thaliana pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G17990 0.5kb upstream 0.5kb upstream 3193 true Chr5: 5956713-5959905 Arabidopsis thaliana
AT5G17990 0.5kb upstream 0.5kb upstream 500 false Chr5: 5956713-5957212 Arabidopsis thaliana
AT5G17990 0.5kb downstream 0.5kb downstream 3193 true Chr5: 5957213-5960405 Arabidopsis thaliana
AT5G17990 0.5kb downstream 0.5kb downstream 500 false Chr5: 5959906-5960405 Arabidopsis thaliana
AT5G17990 1.0kb upstream 1.0kb upstream 3693 true Chr5: 5956213-5959905 Arabidopsis thaliana
AT5G17990 1.0kb upstream 1.0kb upstream 1000 false Chr5: 5956213-5957212 Arabidopsis thaliana
AT5G17990 1.0kb downstream 1.0kb downstream 3693 true Chr5: 5957213-5960905 Arabidopsis thaliana
AT5G17990 1.0kb downstream 1.0kb downstream 1000 false Chr5: 5959906-5960905 Arabidopsis thaliana
AT5G17990 2.0kb upstream 2.0kb upstream 4693 true Chr5: 5955213-5959905 Arabidopsis thaliana
AT5G17990 2.0kb upstream 2.0kb upstream 2000 false Chr5: 5955213-5957212 Arabidopsis thaliana
AT5G17990 2.0kb downstream 2.0kb downstream 4693 true Chr5: 5957213-5961905 Arabidopsis thaliana
AT5G17990 2.0kb downstream 2.0kb downstream 2000 false Chr5: 5959906-5961905 Arabidopsis thaliana
AT5G17990 5.0kb upstream 5.0kb upstream 7693 true Chr5: 5952213-5959905 Arabidopsis thaliana
AT5G17990 5.0kb upstream 5.0kb upstream 5000 false Chr5: 5952213-5957212 Arabidopsis thaliana
AT5G17990 5.0kb downstream 5.0kb downstream 7693 true Chr5: 5957213-5964905 Arabidopsis thaliana
AT5G17990 5.0kb downstream 5.0kb downstream 5000 false Chr5: 5959906-5964905 Arabidopsis thaliana
AT5G17990 10.0kb upstream 10.0kb upstream 12693 true Chr5: 5947213-5959905 Arabidopsis thaliana
AT5G17990 10.0kb upstream 10.0kb upstream 10000 false Chr5: 5947213-5957212 Arabidopsis thaliana
AT5G17990 10.0kb downstream 10.0kb downstream 12693 true Chr5: 5957213-5969905 Arabidopsis thaliana
AT5G17990 10.0kb downstream 10.0kb downstream 10000 false Chr5: 5959906-5969905 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122363791 5261 Brassicaceae View MSA
123839950 5264 Brassicales-Malvales View MSA
124345413 5266 SBM View MSA
124243489 5268 Malvidae View MSA
124063634 5270 Rosid View MSA
123740526 5271 Pentapetalae View MSA
122797383 5272 Eudicot View MSA
122046938 5273 Angiosperm View MSA
121344269 5274 Embryophyte View MSA
123424710 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 55.151     High High
cufflinks 14.335       Low
cufflinks 40.217     High  
cufflinks 15.476        
cufflinks 55.784     High High
cufflinks 18.962        

0 Strain