Gene : SPS1F A. thaliana TAIR10
Primary Identifier:  ? AT5G20280 Defline:  (1 of 2) PTHR12526:SF343 - SUCROSE-PHOSPHATE SYNTHASE 1-RELATED
Genomic Order:  1963 Name:  ? AT5G20280
Secondary Identifier:  ? PAC:19670913
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana PWY-7238 Arabidopsis thaliana pathologic  
Athaliana SUCSYN-PWY Arabidopsis thaliana pathologic  

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G20280 0.5kb upstream 0.5kb upstream 5941 true Chr5: 6844714-6850654 Arabidopsis thaliana
AT5G20280 0.5kb upstream 0.5kb upstream 500 false Chr5: 6850155-6850654 Arabidopsis thaliana
AT5G20280 0.5kb downstream 0.5kb downstream 5941 true Chr5: 6844214-6850154 Arabidopsis thaliana
AT5G20280 0.5kb downstream 0.5kb downstream 500 false Chr5: 6844214-6844713 Arabidopsis thaliana
AT5G20280 1.0kb upstream 1.0kb upstream 6441 true Chr5: 6844714-6851154 Arabidopsis thaliana
AT5G20280 1.0kb upstream 1.0kb upstream 1000 false Chr5: 6850155-6851154 Arabidopsis thaliana
AT5G20280 1.0kb downstream 1.0kb downstream 6441 true Chr5: 6843714-6850154 Arabidopsis thaliana
AT5G20280 1.0kb downstream 1.0kb downstream 1000 false Chr5: 6843714-6844713 Arabidopsis thaliana
AT5G20280 2.0kb upstream 2.0kb upstream 7441 true Chr5: 6844714-6852154 Arabidopsis thaliana
AT5G20280 2.0kb upstream 2.0kb upstream 2000 false Chr5: 6850155-6852154 Arabidopsis thaliana
AT5G20280 2.0kb downstream 2.0kb downstream 7441 true Chr5: 6842714-6850154 Arabidopsis thaliana
AT5G20280 2.0kb downstream 2.0kb downstream 2000 false Chr5: 6842714-6844713 Arabidopsis thaliana
AT5G20280 5.0kb upstream 5.0kb upstream 10441 true Chr5: 6844714-6855154 Arabidopsis thaliana
AT5G20280 5.0kb upstream 5.0kb upstream 5000 false Chr5: 6850155-6855154 Arabidopsis thaliana
AT5G20280 5.0kb downstream 5.0kb downstream 10441 true Chr5: 6839714-6850154 Arabidopsis thaliana
AT5G20280 5.0kb downstream 5.0kb downstream 5000 false Chr5: 6839714-6844713 Arabidopsis thaliana
AT5G20280 10.0kb upstream 10.0kb upstream 15441 true Chr5: 6844714-6860154 Arabidopsis thaliana
AT5G20280 10.0kb upstream 10.0kb upstream 10000 false Chr5: 6850155-6860154 Arabidopsis thaliana
AT5G20280 10.0kb downstream 10.0kb downstream 15441 true Chr5: 6834714-6850154 Arabidopsis thaliana
AT5G20280 10.0kb downstream 10.0kb downstream 10000 false Chr5: 6834714-6844713 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122365865 5261 Brassicaceae View MSA
123829547 5264 Brassicales-Malvales View MSA
124337284 5266 SBM View MSA
124251669 5268 Malvidae View MSA
124062800 5270 Rosid View MSA
123741512 5271 Pentapetalae View MSA
122790617 5272 Eudicot View MSA
122047849 5273 Angiosperm View MSA
121310805 5274 Embryophyte View MSA
123348202 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 62.156     High High
cufflinks 16.118       Low
cufflinks 54.116     High  
cufflinks 20.102        
cufflinks 55.6     High  
cufflinks 16.466        

0 Strain