Gene : AT5G20290 A. thaliana TAIR10
Defline:  (1 of 1) PTHR10394:SF6 - 40S RIBOSOMAL PROTEIN S8-1 Genomic Order:  1964
Name:  ? AT5G20290 Secondary Identifier:  ? PAC:19665560
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G20290 0.5kb upstream 0.5kb upstream 2115 true Chr5: 6851452-6853566 Arabidopsis thaliana
AT5G20290 0.5kb upstream 0.5kb upstream 500 false Chr5: 6853067-6853566 Arabidopsis thaliana
AT5G20290 0.5kb downstream 0.5kb downstream 2115 true Chr5: 6850952-6853066 Arabidopsis thaliana
AT5G20290 0.5kb downstream 0.5kb downstream 500 false Chr5: 6850952-6851451 Arabidopsis thaliana
AT5G20290 1.0kb upstream 1.0kb upstream 2615 true Chr5: 6851452-6854066 Arabidopsis thaliana
AT5G20290 1.0kb upstream 1.0kb upstream 1000 false Chr5: 6853067-6854066 Arabidopsis thaliana
AT5G20290 1.0kb downstream 1.0kb downstream 2615 true Chr5: 6850452-6853066 Arabidopsis thaliana
AT5G20290 1.0kb downstream 1.0kb downstream 1000 false Chr5: 6850452-6851451 Arabidopsis thaliana
AT5G20290 2.0kb upstream 2.0kb upstream 3615 true Chr5: 6851452-6855066 Arabidopsis thaliana
AT5G20290 2.0kb upstream 2.0kb upstream 2000 false Chr5: 6853067-6855066 Arabidopsis thaliana
AT5G20290 2.0kb downstream 2.0kb downstream 3615 true Chr5: 6849452-6853066 Arabidopsis thaliana
AT5G20290 2.0kb downstream 2.0kb downstream 2000 false Chr5: 6849452-6851451 Arabidopsis thaliana
AT5G20290 5.0kb upstream 5.0kb upstream 6615 true Chr5: 6851452-6858066 Arabidopsis thaliana
AT5G20290 5.0kb upstream 5.0kb upstream 5000 false Chr5: 6853067-6858066 Arabidopsis thaliana
AT5G20290 5.0kb downstream 5.0kb downstream 6615 true Chr5: 6846452-6853066 Arabidopsis thaliana
AT5G20290 5.0kb downstream 5.0kb downstream 5000 false Chr5: 6846452-6851451 Arabidopsis thaliana
AT5G20290 10.0kb upstream 10.0kb upstream 11615 true Chr5: 6851452-6863066 Arabidopsis thaliana
AT5G20290 10.0kb upstream 10.0kb upstream 10000 false Chr5: 6853067-6863066 Arabidopsis thaliana
AT5G20290 10.0kb downstream 10.0kb downstream 11615 true Chr5: 6841452-6853066 Arabidopsis thaliana
AT5G20290 10.0kb downstream 10.0kb downstream 10000 false Chr5: 6841452-6851451 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122363387 5261 Brassicaceae View MSA
123840294 5264 Brassicales-Malvales View MSA
124346908 5266 SBM View MSA
124248958 5268 Malvidae View MSA
124069380 5270 Rosid View MSA
123753102 5271 Pentapetalae View MSA
122794895 5272 Eudicot View MSA
122047330 5273 Angiosperm View MSA
121343984 5274 Embryophyte View MSA
123428186 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 314.144     High  
cufflinks 547.295     High  
cufflinks 297.599     High  
cufflinks 518.63     High  
cufflinks 230.603     High Low
cufflinks 594.424     High High

0 Strain