Gene : AT5G20060 A. thaliana TAIR10
Defline:  (1 of 2) K06130 - lysophospholipase II (LYPLA2) Genomic Order:  1940
Name:  ? AT5G20060 Secondary Identifier:  ? PAC:19671655
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1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana PWY-7409 Arabidopsis thaliana pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G20060 0.5kb upstream 0.5kb upstream 3948 true Chr5: 6775667-6779614 Arabidopsis thaliana
AT5G20060 0.5kb upstream 0.5kb upstream 500 false Chr5: 6775667-6776166 Arabidopsis thaliana
AT5G20060 0.5kb downstream 0.5kb downstream 3948 true Chr5: 6776167-6780114 Arabidopsis thaliana
AT5G20060 0.5kb downstream 0.5kb downstream 500 false Chr5: 6779615-6780114 Arabidopsis thaliana
AT5G20060 1.0kb upstream 1.0kb upstream 4448 true Chr5: 6775167-6779614 Arabidopsis thaliana
AT5G20060 1.0kb upstream 1.0kb upstream 1000 false Chr5: 6775167-6776166 Arabidopsis thaliana
AT5G20060 1.0kb downstream 1.0kb downstream 4448 true Chr5: 6776167-6780614 Arabidopsis thaliana
AT5G20060 1.0kb downstream 1.0kb downstream 1000 false Chr5: 6779615-6780614 Arabidopsis thaliana
AT5G20060 2.0kb upstream 2.0kb upstream 5448 true Chr5: 6774167-6779614 Arabidopsis thaliana
AT5G20060 2.0kb upstream 2.0kb upstream 2000 false Chr5: 6774167-6776166 Arabidopsis thaliana
AT5G20060 2.0kb downstream 2.0kb downstream 5448 true Chr5: 6776167-6781614 Arabidopsis thaliana
AT5G20060 2.0kb downstream 2.0kb downstream 2000 false Chr5: 6779615-6781614 Arabidopsis thaliana
AT5G20060 5.0kb upstream 5.0kb upstream 8448 true Chr5: 6771167-6779614 Arabidopsis thaliana
AT5G20060 5.0kb upstream 5.0kb upstream 5000 false Chr5: 6771167-6776166 Arabidopsis thaliana
AT5G20060 5.0kb downstream 5.0kb downstream 8448 true Chr5: 6776167-6784614 Arabidopsis thaliana
AT5G20060 5.0kb downstream 5.0kb downstream 5000 false Chr5: 6779615-6784614 Arabidopsis thaliana
AT5G20060 10.0kb upstream 10.0kb upstream 13448 true Chr5: 6766167-6779614 Arabidopsis thaliana
AT5G20060 10.0kb upstream 10.0kb upstream 10000 false Chr5: 6766167-6776166 Arabidopsis thaliana
AT5G20060 10.0kb downstream 10.0kb downstream 13448 true Chr5: 6776167-6789614 Arabidopsis thaliana
AT5G20060 10.0kb downstream 10.0kb downstream 10000 false Chr5: 6779615-6789614 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122377589 5261 Brassicaceae View MSA
123835290 5264 Brassicales-Malvales View MSA
124348957 5266 SBM View MSA
124245146 5268 Malvidae View MSA
124070848 5270 Rosid View MSA
123747021 5271 Pentapetalae View MSA
122795492 5272 Eudicot View MSA
122046747 5273 Angiosperm View MSA
121349351 5274 Embryophyte View MSA
123428773 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.273        
cufflinks 2.739       Low
cufflinks 3.499       High
cufflinks 3.091        
cufflinks 2.966        
cufflinks 3.449        

0 Strain