Gene : CDPK9 A. thaliana TAIR10
Primary Identifier:  ? AT5G23580 Defline:  (1 of 3) PTHR24349//PTHR24349:SF166 - SERINE/THREONINE-PROTEIN KINASE // CALCIUM-DEPENDENT PROTEIN KINASE 11-RELATED
Genomic Order:  2236 Name:  ? AT5G23580
Secondary Identifier:  ? PAC:19670318
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0 Pathways

Genomics

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Expression

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4 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G23580 0.5kb upstream 0.5kb upstream 2831 true Chr5: 7950202-7953032 Arabidopsis thaliana
AT5G23580 0.5kb upstream 0.5kb upstream 500 false Chr5: 7952533-7953032 Arabidopsis thaliana
AT5G23580 0.5kb downstream 0.5kb downstream 2831 true Chr5: 7949702-7952532 Arabidopsis thaliana
AT5G23580 0.5kb downstream 0.5kb downstream 500 false Chr5: 7949702-7950201 Arabidopsis thaliana
AT5G23580 1.0kb upstream 1.0kb upstream 3331 true Chr5: 7950202-7953532 Arabidopsis thaliana
AT5G23580 1.0kb upstream 1.0kb upstream 1000 false Chr5: 7952533-7953532 Arabidopsis thaliana
AT5G23580 1.0kb downstream 1.0kb downstream 3331 true Chr5: 7949202-7952532 Arabidopsis thaliana
AT5G23580 1.0kb downstream 1.0kb downstream 1000 false Chr5: 7949202-7950201 Arabidopsis thaliana
AT5G23580 2.0kb upstream 2.0kb upstream 4331 true Chr5: 7950202-7954532 Arabidopsis thaliana
AT5G23580 2.0kb upstream 2.0kb upstream 2000 false Chr5: 7952533-7954532 Arabidopsis thaliana
AT5G23580 2.0kb downstream 2.0kb downstream 4331 true Chr5: 7948202-7952532 Arabidopsis thaliana
AT5G23580 2.0kb downstream 2.0kb downstream 2000 false Chr5: 7948202-7950201 Arabidopsis thaliana
AT5G23580 5.0kb upstream 5.0kb upstream 7331 true Chr5: 7950202-7957532 Arabidopsis thaliana
AT5G23580 5.0kb upstream 5.0kb upstream 5000 false Chr5: 7952533-7957532 Arabidopsis thaliana
AT5G23580 5.0kb downstream 5.0kb downstream 7331 true Chr5: 7945202-7952532 Arabidopsis thaliana
AT5G23580 5.0kb downstream 5.0kb downstream 5000 false Chr5: 7945202-7950201 Arabidopsis thaliana
AT5G23580 10.0kb upstream 10.0kb upstream 12331 true Chr5: 7950202-7962532 Arabidopsis thaliana
AT5G23580 10.0kb upstream 10.0kb upstream 10000 false Chr5: 7952533-7962532 Arabidopsis thaliana
AT5G23580 10.0kb downstream 10.0kb downstream 12331 true Chr5: 7940202-7952532 Arabidopsis thaliana
AT5G23580 10.0kb downstream 10.0kb downstream 10000 false Chr5: 7940202-7950201 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122369493 5261 Brassicaceae View MSA
123841198 5264 Brassicales-Malvales View MSA
124340869 5266 SBM View MSA
124252958 5268 Malvidae View MSA
124069708 5270 Rosid View MSA
123741053 5271 Pentapetalae View MSA
122787584 5272 Eudicot View MSA
122047311 5273 Angiosperm View MSA
121310726 5274 Embryophyte View MSA
123427978 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 8.186        
cufflinks 19.135        
cufflinks 6.272        
cufflinks 17.667        
cufflinks 4.983       Low
cufflinks 21.526       High

0 Strain