Gene : AT5G23470 A. thaliana TAIR10
Defline:  (1 of 14) PTHR23081 - RNA POLYMERASE II CTD PHOSPHATASE Genomic Order:  2225
Name:  ? AT5G23470 Secondary Identifier:  ? PAC:19666154
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G23470 0.5kb upstream 0.5kb upstream 1409 true Chr5: 7913361-7914769 Arabidopsis thaliana
AT5G23470 0.5kb upstream 0.5kb upstream 500 false Chr5: 7913361-7913860 Arabidopsis thaliana
AT5G23470 0.5kb downstream 0.5kb downstream 1409 true Chr5: 7913861-7915269 Arabidopsis thaliana
AT5G23470 0.5kb downstream 0.5kb downstream 500 false Chr5: 7914770-7915269 Arabidopsis thaliana
AT5G23470 1.0kb upstream 1.0kb upstream 1909 true Chr5: 7912861-7914769 Arabidopsis thaliana
AT5G23470 1.0kb upstream 1.0kb upstream 1000 false Chr5: 7912861-7913860 Arabidopsis thaliana
AT5G23470 1.0kb downstream 1.0kb downstream 1909 true Chr5: 7913861-7915769 Arabidopsis thaliana
AT5G23470 1.0kb downstream 1.0kb downstream 1000 false Chr5: 7914770-7915769 Arabidopsis thaliana
AT5G23470 2.0kb upstream 2.0kb upstream 2909 true Chr5: 7911861-7914769 Arabidopsis thaliana
AT5G23470 2.0kb upstream 2.0kb upstream 2000 false Chr5: 7911861-7913860 Arabidopsis thaliana
AT5G23470 2.0kb downstream 2.0kb downstream 2909 true Chr5: 7913861-7916769 Arabidopsis thaliana
AT5G23470 2.0kb downstream 2.0kb downstream 2000 false Chr5: 7914770-7916769 Arabidopsis thaliana
AT5G23470 5.0kb upstream 5.0kb upstream 5909 true Chr5: 7908861-7914769 Arabidopsis thaliana
AT5G23470 5.0kb upstream 5.0kb upstream 5000 false Chr5: 7908861-7913860 Arabidopsis thaliana
AT5G23470 5.0kb downstream 5.0kb downstream 5909 true Chr5: 7913861-7919769 Arabidopsis thaliana
AT5G23470 5.0kb downstream 5.0kb downstream 5000 false Chr5: 7914770-7919769 Arabidopsis thaliana
AT5G23470 10.0kb upstream 10.0kb upstream 10909 true Chr5: 7903861-7914769 Arabidopsis thaliana
AT5G23470 10.0kb upstream 10.0kb upstream 10000 false Chr5: 7903861-7913860 Arabidopsis thaliana
AT5G23470 10.0kb downstream 10.0kb downstream 10909 true Chr5: 7913861-7924769 Arabidopsis thaliana
AT5G23470 10.0kb downstream 10.0kb downstream 10000 false Chr5: 7914770-7924769 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122376538 5261 Brassicaceae View MSA
123801280 5264 Brassicales-Malvales View MSA
124298602 5266 SBM View MSA
124255181 5268 Malvidae View MSA
124074677 5270 Rosid View MSA
123750170 5271 Pentapetalae View MSA
122796658 5272 Eudicot View MSA
122050770 5273 Angiosperm View MSA
123428917 5275 Viridiplantae View MSA
121350466 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.017     Low  
cufflinks 0.016     Low  
cufflinks 0.051     Low High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.034     Low  

0 Strain