Gene : AT5G23400 A. thaliana TAIR10
Defline:  (1 of 1) PTHR27000//PTHR27000:SF102 - FAMILY NOT NAMED // DISEASE RESISTANCE PROTEIN-LIKE Genomic Order:  2217
Name:  ? AT5G23400 Secondary Identifier:  ? PAC:19673127
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G23400 0.5kb upstream 0.5kb upstream 2800 true Chr5: 7879835-7882634 Arabidopsis thaliana
AT5G23400 0.5kb upstream 0.5kb upstream 500 false Chr5: 7879835-7880334 Arabidopsis thaliana
AT5G23400 0.5kb downstream 0.5kb downstream 2800 true Chr5: 7880335-7883134 Arabidopsis thaliana
AT5G23400 0.5kb downstream 0.5kb downstream 500 false Chr5: 7882635-7883134 Arabidopsis thaliana
AT5G23400 1.0kb upstream 1.0kb upstream 3300 true Chr5: 7879335-7882634 Arabidopsis thaliana
AT5G23400 1.0kb upstream 1.0kb upstream 1000 false Chr5: 7879335-7880334 Arabidopsis thaliana
AT5G23400 1.0kb downstream 1.0kb downstream 3300 true Chr5: 7880335-7883634 Arabidopsis thaliana
AT5G23400 1.0kb downstream 1.0kb downstream 1000 false Chr5: 7882635-7883634 Arabidopsis thaliana
AT5G23400 2.0kb upstream 2.0kb upstream 4300 true Chr5: 7878335-7882634 Arabidopsis thaliana
AT5G23400 2.0kb upstream 2.0kb upstream 2000 false Chr5: 7878335-7880334 Arabidopsis thaliana
AT5G23400 2.0kb downstream 2.0kb downstream 4300 true Chr5: 7880335-7884634 Arabidopsis thaliana
AT5G23400 2.0kb downstream 2.0kb downstream 2000 false Chr5: 7882635-7884634 Arabidopsis thaliana
AT5G23400 5.0kb upstream 5.0kb upstream 7300 true Chr5: 7875335-7882634 Arabidopsis thaliana
AT5G23400 5.0kb upstream 5.0kb upstream 5000 false Chr5: 7875335-7880334 Arabidopsis thaliana
AT5G23400 5.0kb downstream 5.0kb downstream 7300 true Chr5: 7880335-7887634 Arabidopsis thaliana
AT5G23400 5.0kb downstream 5.0kb downstream 5000 false Chr5: 7882635-7887634 Arabidopsis thaliana
AT5G23400 10.0kb upstream 10.0kb upstream 12300 true Chr5: 7870335-7882634 Arabidopsis thaliana
AT5G23400 10.0kb upstream 10.0kb upstream 10000 false Chr5: 7870335-7880334 Arabidopsis thaliana
AT5G23400 10.0kb downstream 10.0kb downstream 12300 true Chr5: 7880335-7892634 Arabidopsis thaliana
AT5G23400 10.0kb downstream 10.0kb downstream 10000 false Chr5: 7882635-7892634 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122366900 5261 Brassicaceae View MSA
123827474 5264 Brassicales-Malvales View MSA
124337990 5266 SBM View MSA
124253282 5268 Malvidae View MSA
124071295 5270 Rosid View MSA
123753765 5271 Pentapetalae View MSA
122797900 5272 Eudicot View MSA
122051692 5273 Angiosperm View MSA
123429169 5275 Viridiplantae View MSA
121351748 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.412        
cufflinks 19.113        
cufflinks 2.248        
cufflinks 16.399        
cufflinks 1.718       Low
cufflinks 27.625       High

0 Strain