Gene : ALY1 A. thaliana TAIR10
Primary Identifier:  ? AT5G27610 Defline:  (1 of 2) PTHR21689:SF3 - PROTEIN ALWAYS EARLY 1-RELATED
Genomic Order:  2637 Name:  ? AT5G27610
Secondary Identifier:  ? PAC:19667144
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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G27610 0.5kb upstream 0.5kb upstream 6269 true Chr5: 9763635-9769903 Arabidopsis thaliana
AT5G27610 0.5kb upstream 0.5kb upstream 500 false Chr5: 9763635-9764134 Arabidopsis thaliana
AT5G27610 0.5kb downstream 0.5kb downstream 6269 true Chr5: 9764135-9770403 Arabidopsis thaliana
AT5G27610 0.5kb downstream 0.5kb downstream 500 false Chr5: 9769904-9770403 Arabidopsis thaliana
AT5G27610 1.0kb upstream 1.0kb upstream 6769 true Chr5: 9763135-9769903 Arabidopsis thaliana
AT5G27610 1.0kb upstream 1.0kb upstream 1000 false Chr5: 9763135-9764134 Arabidopsis thaliana
AT5G27610 1.0kb downstream 1.0kb downstream 6769 true Chr5: 9764135-9770903 Arabidopsis thaliana
AT5G27610 1.0kb downstream 1.0kb downstream 1000 false Chr5: 9769904-9770903 Arabidopsis thaliana
AT5G27610 2.0kb upstream 2.0kb upstream 7769 true Chr5: 9762135-9769903 Arabidopsis thaliana
AT5G27610 2.0kb upstream 2.0kb upstream 2000 false Chr5: 9762135-9764134 Arabidopsis thaliana
AT5G27610 2.0kb downstream 2.0kb downstream 7769 true Chr5: 9764135-9771903 Arabidopsis thaliana
AT5G27610 2.0kb downstream 2.0kb downstream 2000 false Chr5: 9769904-9771903 Arabidopsis thaliana
AT5G27610 5.0kb upstream 5.0kb upstream 10769 true Chr5: 9759135-9769903 Arabidopsis thaliana
AT5G27610 5.0kb upstream 5.0kb upstream 5000 false Chr5: 9759135-9764134 Arabidopsis thaliana
AT5G27610 5.0kb downstream 5.0kb downstream 10769 true Chr5: 9764135-9774903 Arabidopsis thaliana
AT5G27610 5.0kb downstream 5.0kb downstream 5000 false Chr5: 9769904-9774903 Arabidopsis thaliana
AT5G27610 10.0kb upstream 10.0kb upstream 15769 true Chr5: 9754135-9769903 Arabidopsis thaliana
AT5G27610 10.0kb upstream 10.0kb upstream 10000 false Chr5: 9754135-9764134 Arabidopsis thaliana
AT5G27610 10.0kb downstream 10.0kb downstream 15769 true Chr5: 9764135-9779903 Arabidopsis thaliana
AT5G27610 10.0kb downstream 10.0kb downstream 10000 false Chr5: 9769904-9779903 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122040981 5273 Angiosperm View MSA
122377971 5261 Brassicaceae View MSA
123801690 5264 Brassicales-Malvales View MSA
124350607 5266 SBM View MSA
124253154 5268 Malvidae View MSA
124072139 5270 Rosid View MSA
123744019 5271 Pentapetalae View MSA
122796198 5272 Eudicot View MSA
121349318 5274 Embryophyte View MSA
123424502 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.304        
cufflinks 1.774        
cufflinks 1.202       Low
cufflinks 2.019       High
cufflinks 1.475        
cufflinks 1.364        

0 Strain