Gene : AT5G27530 A. thaliana TAIR10
Defline:  (1 of 8) PTHR31736//PTHR31736:SF10 - FAMILY NOT NAMED // GLYCOSIDE HYDROLASE FAMILY 28 PROTEIN / POLYGALACTURONASE (PECTINASE) FAMILY PROTEIN-RELATED Genomic Order:  2629
Name:  ? AT5G27530 Secondary Identifier:  ? PAC:19666763
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Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana PWY-1081 Arabidopsis thaliana pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G27530 0.5kb upstream 0.5kb upstream 4095 true Chr5: 9717003-9721097 Arabidopsis thaliana
AT5G27530 0.5kb upstream 0.5kb upstream 500 false Chr5: 9717003-9717502 Arabidopsis thaliana
AT5G27530 0.5kb downstream 0.5kb downstream 4095 true Chr5: 9717503-9721597 Arabidopsis thaliana
AT5G27530 0.5kb downstream 0.5kb downstream 500 false Chr5: 9721098-9721597 Arabidopsis thaliana
AT5G27530 1.0kb upstream 1.0kb upstream 4595 true Chr5: 9716503-9721097 Arabidopsis thaliana
AT5G27530 1.0kb upstream 1.0kb upstream 1000 false Chr5: 9716503-9717502 Arabidopsis thaliana
AT5G27530 1.0kb downstream 1.0kb downstream 4595 true Chr5: 9717503-9722097 Arabidopsis thaliana
AT5G27530 1.0kb downstream 1.0kb downstream 1000 false Chr5: 9721098-9722097 Arabidopsis thaliana
AT5G27530 2.0kb upstream 2.0kb upstream 5595 true Chr5: 9715503-9721097 Arabidopsis thaliana
AT5G27530 2.0kb upstream 2.0kb upstream 2000 false Chr5: 9715503-9717502 Arabidopsis thaliana
AT5G27530 2.0kb downstream 2.0kb downstream 5595 true Chr5: 9717503-9723097 Arabidopsis thaliana
AT5G27530 2.0kb downstream 2.0kb downstream 2000 false Chr5: 9721098-9723097 Arabidopsis thaliana
AT5G27530 5.0kb upstream 5.0kb upstream 8595 true Chr5: 9712503-9721097 Arabidopsis thaliana
AT5G27530 5.0kb upstream 5.0kb upstream 5000 false Chr5: 9712503-9717502 Arabidopsis thaliana
AT5G27530 5.0kb downstream 5.0kb downstream 8595 true Chr5: 9717503-9726097 Arabidopsis thaliana
AT5G27530 5.0kb downstream 5.0kb downstream 5000 false Chr5: 9721098-9726097 Arabidopsis thaliana
AT5G27530 10.0kb upstream 10.0kb upstream 13595 true Chr5: 9707503-9721097 Arabidopsis thaliana
AT5G27530 10.0kb upstream 10.0kb upstream 10000 false Chr5: 9707503-9717502 Arabidopsis thaliana
AT5G27530 10.0kb downstream 10.0kb downstream 13595 true Chr5: 9717503-9731097 Arabidopsis thaliana
AT5G27530 10.0kb downstream 10.0kb downstream 10000 false Chr5: 9721098-9731097 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122373104 5261 Brassicaceae View MSA
123841125 5264 Brassicales-Malvales View MSA
124351120 5266 SBM View MSA
124249641 5268 Malvidae View MSA
124070803 5270 Rosid View MSA
123753570 5271 Pentapetalae View MSA
122797497 5272 Eudicot View MSA
122051291 5273 Angiosperm View MSA
121350352 5274 Embryophyte View MSA
123381691 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed

0 Strain