Gene : AGL39 A. thaliana TAIR10
Primary Identifier:  ? AT5G27130 Defline:  (1 of 6) PTHR11945//PTHR11945:SF204 - MADS BOX PROTEIN // F21D18.12-RELATED
Genomic Order:  2591 Name:  ? AT5G27130
Secondary Identifier:  ? PAC:19666602
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0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G27130 0.5kb upstream 0.5kb upstream 1507 true Chr5: 9546047-9547553 Arabidopsis thaliana
AT5G27130 0.5kb upstream 0.5kb upstream 500 false Chr5: 9546047-9546546 Arabidopsis thaliana
AT5G27130 0.5kb downstream 0.5kb downstream 1507 true Chr5: 9546547-9548053 Arabidopsis thaliana
AT5G27130 0.5kb downstream 0.5kb downstream 500 false Chr5: 9547554-9548053 Arabidopsis thaliana
AT5G27130 1.0kb upstream 1.0kb upstream 2007 true Chr5: 9545547-9547553 Arabidopsis thaliana
AT5G27130 1.0kb upstream 1.0kb upstream 1000 false Chr5: 9545547-9546546 Arabidopsis thaliana
AT5G27130 1.0kb downstream 1.0kb downstream 2007 true Chr5: 9546547-9548553 Arabidopsis thaliana
AT5G27130 1.0kb downstream 1.0kb downstream 1000 false Chr5: 9547554-9548553 Arabidopsis thaliana
AT5G27130 2.0kb upstream 2.0kb upstream 3007 true Chr5: 9544547-9547553 Arabidopsis thaliana
AT5G27130 2.0kb upstream 2.0kb upstream 2000 false Chr5: 9544547-9546546 Arabidopsis thaliana
AT5G27130 2.0kb downstream 2.0kb downstream 3007 true Chr5: 9546547-9549553 Arabidopsis thaliana
AT5G27130 2.0kb downstream 2.0kb downstream 2000 false Chr5: 9547554-9549553 Arabidopsis thaliana
AT5G27130 5.0kb upstream 5.0kb upstream 6007 true Chr5: 9541547-9547553 Arabidopsis thaliana
AT5G27130 5.0kb upstream 5.0kb upstream 5000 false Chr5: 9541547-9546546 Arabidopsis thaliana
AT5G27130 5.0kb downstream 5.0kb downstream 6007 true Chr5: 9546547-9552553 Arabidopsis thaliana
AT5G27130 5.0kb downstream 5.0kb downstream 5000 false Chr5: 9547554-9552553 Arabidopsis thaliana
AT5G27130 10.0kb upstream 10.0kb upstream 11007 true Chr5: 9536547-9547553 Arabidopsis thaliana
AT5G27130 10.0kb upstream 10.0kb upstream 10000 false Chr5: 9536547-9546546 Arabidopsis thaliana
AT5G27130 10.0kb downstream 10.0kb downstream 11007 true Chr5: 9546547-9557553 Arabidopsis thaliana
AT5G27130 10.0kb downstream 10.0kb downstream 10000 false Chr5: 9547554-9557553 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121512370 5273 Angiosperm View MSA
122381606 5261 Brassicaceae View MSA
123803334 5264 Brassicales-Malvales View MSA
124300450 5266 SBM View MSA
124151634 5268 Malvidae View MSA
123877029 5270 Rosid View MSA
123460619 5271 Pentapetalae View MSA
122495987 5272 Eudicot View MSA
120785391 5274 Embryophyte View MSA
122827257 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.015     Low Low
cufflinks 0.075     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.116     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.14     Low  

0 Strain