Gene : AT5G27110 A. thaliana TAIR10
Defline:  (1 of 185) PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Genomic Order:  2589
Name:  ? AT5G27110 Secondary Identifier:  ? PAC:19666448
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G27110 0.5kb upstream 0.5kb upstream 2576 true Chr5: 9538572-9541147 Arabidopsis thaliana
AT5G27110 0.5kb upstream 0.5kb upstream 500 false Chr5: 9540648-9541147 Arabidopsis thaliana
AT5G27110 0.5kb downstream 0.5kb downstream 2576 true Chr5: 9538072-9540647 Arabidopsis thaliana
AT5G27110 0.5kb downstream 0.5kb downstream 500 false Chr5: 9538072-9538571 Arabidopsis thaliana
AT5G27110 1.0kb upstream 1.0kb upstream 3076 true Chr5: 9538572-9541647 Arabidopsis thaliana
AT5G27110 1.0kb upstream 1.0kb upstream 1000 false Chr5: 9540648-9541647 Arabidopsis thaliana
AT5G27110 1.0kb downstream 1.0kb downstream 3076 true Chr5: 9537572-9540647 Arabidopsis thaliana
AT5G27110 1.0kb downstream 1.0kb downstream 1000 false Chr5: 9537572-9538571 Arabidopsis thaliana
AT5G27110 2.0kb upstream 2.0kb upstream 4076 true Chr5: 9538572-9542647 Arabidopsis thaliana
AT5G27110 2.0kb upstream 2.0kb upstream 2000 false Chr5: 9540648-9542647 Arabidopsis thaliana
AT5G27110 2.0kb downstream 2.0kb downstream 4076 true Chr5: 9536572-9540647 Arabidopsis thaliana
AT5G27110 2.0kb downstream 2.0kb downstream 2000 false Chr5: 9536572-9538571 Arabidopsis thaliana
AT5G27110 5.0kb upstream 5.0kb upstream 7076 true Chr5: 9538572-9545647 Arabidopsis thaliana
AT5G27110 5.0kb upstream 5.0kb upstream 5000 false Chr5: 9540648-9545647 Arabidopsis thaliana
AT5G27110 5.0kb downstream 5.0kb downstream 7076 true Chr5: 9533572-9540647 Arabidopsis thaliana
AT5G27110 5.0kb downstream 5.0kb downstream 5000 false Chr5: 9533572-9538571 Arabidopsis thaliana
AT5G27110 10.0kb upstream 10.0kb upstream 12076 true Chr5: 9538572-9550647 Arabidopsis thaliana
AT5G27110 10.0kb upstream 10.0kb upstream 10000 false Chr5: 9540648-9550647 Arabidopsis thaliana
AT5G27110 10.0kb downstream 10.0kb downstream 12076 true Chr5: 9528572-9540647 Arabidopsis thaliana
AT5G27110 10.0kb downstream 10.0kb downstream 10000 false Chr5: 9528572-9538571 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122367390 5261 Brassicaceae View MSA
123827605 5264 Brassicales-Malvales View MSA
124343196 5266 SBM View MSA
124243845 5268 Malvidae View MSA
124072628 5270 Rosid View MSA
123753779 5271 Pentapetalae View MSA
122797667 5272 Eudicot View MSA
122051669 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121351733 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.09       High
cufflinks 1.372        
cufflinks 1.236        
cufflinks 1.667        
cufflinks 1.094       Low
cufflinks 1.567        

0 Strain