Gene : AT5G28220 A. thaliana TAIR10
Defline:  (1 of 2) PTHR12760 - TETRATRICOPEPTIDE REPEAT PROTEIN Genomic Order:  2695
Name:  ? AT5G28220 Secondary Identifier:  ? PAC:19671751
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G28220 0.5kb upstream 0.5kb upstream 3263 true Chr5: 10190357-10193619 Arabidopsis thaliana
AT5G28220 0.5kb upstream 0.5kb upstream 500 false Chr5: 10193120-10193619 Arabidopsis thaliana
AT5G28220 0.5kb downstream 0.5kb downstream 3263 true Chr5: 10189857-10193119 Arabidopsis thaliana
AT5G28220 0.5kb downstream 0.5kb downstream 500 false Chr5: 10189857-10190356 Arabidopsis thaliana
AT5G28220 1.0kb upstream 1.0kb upstream 3763 true Chr5: 10190357-10194119 Arabidopsis thaliana
AT5G28220 1.0kb upstream 1.0kb upstream 1000 false Chr5: 10193120-10194119 Arabidopsis thaliana
AT5G28220 1.0kb downstream 1.0kb downstream 3763 true Chr5: 10189357-10193119 Arabidopsis thaliana
AT5G28220 1.0kb downstream 1.0kb downstream 1000 false Chr5: 10189357-10190356 Arabidopsis thaliana
AT5G28220 2.0kb upstream 2.0kb upstream 4763 true Chr5: 10190357-10195119 Arabidopsis thaliana
AT5G28220 2.0kb upstream 2.0kb upstream 2000 false Chr5: 10193120-10195119 Arabidopsis thaliana
AT5G28220 2.0kb downstream 2.0kb downstream 4763 true Chr5: 10188357-10193119 Arabidopsis thaliana
AT5G28220 2.0kb downstream 2.0kb downstream 2000 false Chr5: 10188357-10190356 Arabidopsis thaliana
AT5G28220 5.0kb upstream 5.0kb upstream 7763 true Chr5: 10190357-10198119 Arabidopsis thaliana
AT5G28220 5.0kb upstream 5.0kb upstream 5000 false Chr5: 10193120-10198119 Arabidopsis thaliana
AT5G28220 5.0kb downstream 5.0kb downstream 7763 true Chr5: 10185357-10193119 Arabidopsis thaliana
AT5G28220 5.0kb downstream 5.0kb downstream 5000 false Chr5: 10185357-10190356 Arabidopsis thaliana
AT5G28220 10.0kb upstream 10.0kb upstream 12763 true Chr5: 10190357-10203119 Arabidopsis thaliana
AT5G28220 10.0kb upstream 10.0kb upstream 10000 false Chr5: 10193120-10203119 Arabidopsis thaliana
AT5G28220 10.0kb downstream 10.0kb downstream 12763 true Chr5: 10180357-10193119 Arabidopsis thaliana
AT5G28220 10.0kb downstream 10.0kb downstream 10000 false Chr5: 10180357-10190356 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122375506 5261 Brassicaceae View MSA
123800974 5264 Brassicales-Malvales View MSA
124298325 5266 SBM View MSA
124149990 5268 Malvidae View MSA
123875691 5270 Rosid View MSA
123741207 5271 Pentapetalae View MSA
122787866 5272 Eudicot View MSA
122047894 5273 Angiosperm View MSA
121346659 5274 Embryophyte View MSA
123424926 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.9        
cufflinks 2.904       Low
cufflinks 3.73        
cufflinks 3.289        
cufflinks 4.084       High
cufflinks 3.604        

0 Strain