Gene : AT5G28237 A. thaliana TAIR10
Defline:  (1 of 1) PTHR10314//PTHR10314:SF123 - SER/THR DEHYDRATASE, TRP SYNTHASE // TRYPTOPHAN SYNTHASE BETA CHAIN-LIKE PROTEIN Genomic Order:  2697
Name:  ? AT5G28237 Secondary Identifier:  ? PAC:19669187
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana TRPSYN-PWY Arabidopsis thaliana pathologic  

Genomics

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Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G28237 0.5kb upstream 0.5kb upstream 6746 true Chr5: 10207353-10214098 Arabidopsis thaliana
AT5G28237 0.5kb upstream 0.5kb upstream 500 false Chr5: 10213599-10214098 Arabidopsis thaliana
AT5G28237 0.5kb downstream 0.5kb downstream 6746 true Chr5: 10206853-10213598 Arabidopsis thaliana
AT5G28237 0.5kb downstream 0.5kb downstream 500 false Chr5: 10206853-10207352 Arabidopsis thaliana
AT5G28237 1.0kb upstream 1.0kb upstream 7246 true Chr5: 10207353-10214598 Arabidopsis thaliana
AT5G28237 1.0kb upstream 1.0kb upstream 1000 false Chr5: 10213599-10214598 Arabidopsis thaliana
AT5G28237 1.0kb downstream 1.0kb downstream 7246 true Chr5: 10206353-10213598 Arabidopsis thaliana
AT5G28237 1.0kb downstream 1.0kb downstream 1000 false Chr5: 10206353-10207352 Arabidopsis thaliana
AT5G28237 2.0kb upstream 2.0kb upstream 8246 true Chr5: 10207353-10215598 Arabidopsis thaliana
AT5G28237 2.0kb upstream 2.0kb upstream 2000 false Chr5: 10213599-10215598 Arabidopsis thaliana
AT5G28237 2.0kb downstream 2.0kb downstream 8246 true Chr5: 10205353-10213598 Arabidopsis thaliana
AT5G28237 2.0kb downstream 2.0kb downstream 2000 false Chr5: 10205353-10207352 Arabidopsis thaliana
AT5G28237 5.0kb upstream 5.0kb upstream 11246 true Chr5: 10207353-10218598 Arabidopsis thaliana
AT5G28237 5.0kb upstream 5.0kb upstream 5000 false Chr5: 10213599-10218598 Arabidopsis thaliana
AT5G28237 5.0kb downstream 5.0kb downstream 11246 true Chr5: 10202353-10213598 Arabidopsis thaliana
AT5G28237 5.0kb downstream 5.0kb downstream 5000 false Chr5: 10202353-10207352 Arabidopsis thaliana
AT5G28237 10.0kb upstream 10.0kb upstream 16246 true Chr5: 10207353-10223598 Arabidopsis thaliana
AT5G28237 10.0kb upstream 10.0kb upstream 10000 false Chr5: 10213599-10223598 Arabidopsis thaliana
AT5G28237 10.0kb downstream 10.0kb downstream 16246 true Chr5: 10197353-10213598 Arabidopsis thaliana
AT5G28237 10.0kb downstream 10.0kb downstream 10000 false Chr5: 10197353-10207352 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122364301 5261 Brassicaceae View MSA
123832912 5264 Brassicales-Malvales View MSA
124344343 5266 SBM View MSA
124250400 5268 Malvidae View MSA
124062384 5270 Rosid View MSA
123745831 5271 Pentapetalae View MSA
122787401 5272 Eudicot View MSA
122044231 5273 Angiosperm View MSA
121344651 5274 Embryophyte View MSA
123423776 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.441        
cufflinks 0.012     Low Low
cufflinks 0.943        
cufflinks 0.037     Low  
cufflinks 1.685       High
cufflinks 0.031     Low  

0 Strain