Gene : AT5G37490 A. thaliana TAIR10
Defline:  (1 of 7) PTHR22849//PTHR22849:SF52 - WDSAM1 PROTEIN // E3 UBIQUITIN-PROTEIN LIGASE PUB24-RELATED Genomic Order:  3045
Name:  ? AT5G37490 Secondary Identifier:  ? PAC:19672452
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Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana PWY-7511 Arabidopsis thaliana pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G37490 0.5kb upstream 0.5kb upstream 2174 true Chr5: 14886978-14889151 Arabidopsis thaliana
AT5G37490 0.5kb upstream 0.5kb upstream 500 false Chr5: 14886978-14887477 Arabidopsis thaliana
AT5G37490 0.5kb downstream 0.5kb downstream 2174 true Chr5: 14887478-14889651 Arabidopsis thaliana
AT5G37490 0.5kb downstream 0.5kb downstream 500 false Chr5: 14889152-14889651 Arabidopsis thaliana
AT5G37490 1.0kb upstream 1.0kb upstream 2674 true Chr5: 14886478-14889151 Arabidopsis thaliana
AT5G37490 1.0kb upstream 1.0kb upstream 1000 false Chr5: 14886478-14887477 Arabidopsis thaliana
AT5G37490 1.0kb downstream 1.0kb downstream 2674 true Chr5: 14887478-14890151 Arabidopsis thaliana
AT5G37490 1.0kb downstream 1.0kb downstream 1000 false Chr5: 14889152-14890151 Arabidopsis thaliana
AT5G37490 2.0kb upstream 2.0kb upstream 3674 true Chr5: 14885478-14889151 Arabidopsis thaliana
AT5G37490 2.0kb upstream 2.0kb upstream 2000 false Chr5: 14885478-14887477 Arabidopsis thaliana
AT5G37490 2.0kb downstream 2.0kb downstream 3674 true Chr5: 14887478-14891151 Arabidopsis thaliana
AT5G37490 2.0kb downstream 2.0kb downstream 2000 false Chr5: 14889152-14891151 Arabidopsis thaliana
AT5G37490 5.0kb upstream 5.0kb upstream 6674 true Chr5: 14882478-14889151 Arabidopsis thaliana
AT5G37490 5.0kb upstream 5.0kb upstream 5000 false Chr5: 14882478-14887477 Arabidopsis thaliana
AT5G37490 5.0kb downstream 5.0kb downstream 6674 true Chr5: 14887478-14894151 Arabidopsis thaliana
AT5G37490 5.0kb downstream 5.0kb downstream 5000 false Chr5: 14889152-14894151 Arabidopsis thaliana
AT5G37490 10.0kb upstream 10.0kb upstream 11674 true Chr5: 14877478-14889151 Arabidopsis thaliana
AT5G37490 10.0kb upstream 10.0kb upstream 10000 false Chr5: 14877478-14887477 Arabidopsis thaliana
AT5G37490 10.0kb downstream 10.0kb downstream 11674 true Chr5: 14887478-14899151 Arabidopsis thaliana
AT5G37490 10.0kb downstream 10.0kb downstream 10000 false Chr5: 14889152-14899151 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122374127 5261 Brassicaceae View MSA
123838287 5264 Brassicales-Malvales View MSA
124342273 5266 SBM View MSA
124246000 5268 Malvidae View MSA
124062447 5270 Rosid View MSA
123744256 5271 Pentapetalae View MSA
122789600 5272 Eudicot View MSA
122042359 5273 Angiosperm View MSA
121351063 5274 Embryophyte View MSA
123428864 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.18     Low  
cufflinks 0.765        
cufflinks 0.138     Low Low
cufflinks 1.398       High
cufflinks 0.329        
cufflinks 0.605        

0 Strain