Gene : AT5G40610 A. thaliana TAIR10
Defline:  (1 of 1) PTHR11728:SF8 - GLYCEROL-3-PHOSPHATE DEHYDROGENASE [NAD(+)], CYTOPLASMIC Genomic Order:  3371
Name:  ? AT5G40610 Secondary Identifier:  ? PAC:19667321
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Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana PWY-6118 Arabidopsis thaliana pathologic  
Athaliana PWY-7411 Arabidopsis thaliana pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G40610 0.5kb upstream 0.5kb upstream 2994 true Chr5: 16264861-16267854 Arabidopsis thaliana
AT5G40610 0.5kb upstream 0.5kb upstream 500 false Chr5: 16267355-16267854 Arabidopsis thaliana
AT5G40610 0.5kb downstream 0.5kb downstream 2994 true Chr5: 16264361-16267354 Arabidopsis thaliana
AT5G40610 0.5kb downstream 0.5kb downstream 500 false Chr5: 16264361-16264860 Arabidopsis thaliana
AT5G40610 1.0kb upstream 1.0kb upstream 3494 true Chr5: 16264861-16268354 Arabidopsis thaliana
AT5G40610 1.0kb upstream 1.0kb upstream 1000 false Chr5: 16267355-16268354 Arabidopsis thaliana
AT5G40610 1.0kb downstream 1.0kb downstream 3494 true Chr5: 16263861-16267354 Arabidopsis thaliana
AT5G40610 1.0kb downstream 1.0kb downstream 1000 false Chr5: 16263861-16264860 Arabidopsis thaliana
AT5G40610 2.0kb upstream 2.0kb upstream 4494 true Chr5: 16264861-16269354 Arabidopsis thaliana
AT5G40610 2.0kb upstream 2.0kb upstream 2000 false Chr5: 16267355-16269354 Arabidopsis thaliana
AT5G40610 2.0kb downstream 2.0kb downstream 4494 true Chr5: 16262861-16267354 Arabidopsis thaliana
AT5G40610 2.0kb downstream 2.0kb downstream 2000 false Chr5: 16262861-16264860 Arabidopsis thaliana
AT5G40610 5.0kb upstream 5.0kb upstream 7494 true Chr5: 16264861-16272354 Arabidopsis thaliana
AT5G40610 5.0kb upstream 5.0kb upstream 5000 false Chr5: 16267355-16272354 Arabidopsis thaliana
AT5G40610 5.0kb downstream 5.0kb downstream 7494 true Chr5: 16259861-16267354 Arabidopsis thaliana
AT5G40610 5.0kb downstream 5.0kb downstream 5000 false Chr5: 16259861-16264860 Arabidopsis thaliana
AT5G40610 10.0kb upstream 10.0kb upstream 12494 true Chr5: 16264861-16277354 Arabidopsis thaliana
AT5G40610 10.0kb upstream 10.0kb upstream 10000 false Chr5: 16267355-16277354 Arabidopsis thaliana
AT5G40610 10.0kb downstream 10.0kb downstream 12494 true Chr5: 16254861-16267354 Arabidopsis thaliana
AT5G40610 10.0kb downstream 10.0kb downstream 10000 false Chr5: 16254861-16264860 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122363698 5261 Brassicaceae View MSA
123832123 5264 Brassicales-Malvales View MSA
124342292 5266 SBM View MSA
124243954 5268 Malvidae View MSA
124071828 5270 Rosid View MSA
123739883 5271 Pentapetalae View MSA
122793723 5272 Eudicot View MSA
122048104 5273 Angiosperm View MSA
121348116 5274 Embryophyte View MSA
123428470 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.709       High
cufflinks 3.482       Low
cufflinks 6.785       High
cufflinks 4.332        
cufflinks 5.205        
cufflinks 4.631        

0 Strain