Gene : SDH2-2 A. thaliana TAIR10
Primary Identifier:  ? AT5G40650 Defline:  (1 of 3) K00235 - succinate dehydrogenase (ubiquinone) iron-sulfur subunit (SDHB, SDH2)
Genomic Order:  3376 Name:  ? AT5G40650
Secondary Identifier:  ? PAC:19666862
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Ontology Annotation Displayer

6 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana PWY-3781 Arabidopsis thaliana pathologic  
Athaliana PWY-4302 Arabidopsis thaliana pathologic  
Athaliana PWY-5464 Arabidopsis thaliana pathologic  
Athaliana PWY-561 Arabidopsis thaliana pathologic  
Athaliana PWY-5690 Arabidopsis thaliana pathologic  
Athaliana PWY-7279 Arabidopsis thaliana pathologic  

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G40650 0.5kb upstream 0.5kb upstream 2624 true Chr5: 16280904-16283527 Arabidopsis thaliana
AT5G40650 0.5kb upstream 0.5kb upstream 500 false Chr5: 16280904-16281403 Arabidopsis thaliana
AT5G40650 0.5kb downstream 0.5kb downstream 2624 true Chr5: 16281404-16284027 Arabidopsis thaliana
AT5G40650 0.5kb downstream 0.5kb downstream 500 false Chr5: 16283528-16284027 Arabidopsis thaliana
AT5G40650 1.0kb upstream 1.0kb upstream 3124 true Chr5: 16280404-16283527 Arabidopsis thaliana
AT5G40650 1.0kb upstream 1.0kb upstream 1000 false Chr5: 16280404-16281403 Arabidopsis thaliana
AT5G40650 1.0kb downstream 1.0kb downstream 3124 true Chr5: 16281404-16284527 Arabidopsis thaliana
AT5G40650 1.0kb downstream 1.0kb downstream 1000 false Chr5: 16283528-16284527 Arabidopsis thaliana
AT5G40650 2.0kb upstream 2.0kb upstream 4124 true Chr5: 16279404-16283527 Arabidopsis thaliana
AT5G40650 2.0kb upstream 2.0kb upstream 2000 false Chr5: 16279404-16281403 Arabidopsis thaliana
AT5G40650 2.0kb downstream 2.0kb downstream 4124 true Chr5: 16281404-16285527 Arabidopsis thaliana
AT5G40650 2.0kb downstream 2.0kb downstream 2000 false Chr5: 16283528-16285527 Arabidopsis thaliana
AT5G40650 5.0kb upstream 5.0kb upstream 7124 true Chr5: 16276404-16283527 Arabidopsis thaliana
AT5G40650 5.0kb upstream 5.0kb upstream 5000 false Chr5: 16276404-16281403 Arabidopsis thaliana
AT5G40650 5.0kb downstream 5.0kb downstream 7124 true Chr5: 16281404-16288527 Arabidopsis thaliana
AT5G40650 5.0kb downstream 5.0kb downstream 5000 false Chr5: 16283528-16288527 Arabidopsis thaliana
AT5G40650 10.0kb upstream 10.0kb upstream 12124 true Chr5: 16271404-16283527 Arabidopsis thaliana
AT5G40650 10.0kb upstream 10.0kb upstream 10000 false Chr5: 16271404-16281403 Arabidopsis thaliana
AT5G40650 10.0kb downstream 10.0kb downstream 12124 true Chr5: 16281404-16293527 Arabidopsis thaliana
AT5G40650 10.0kb downstream 10.0kb downstream 10000 false Chr5: 16283528-16293527 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122377104 5261 Brassicaceae View MSA
123827832 5264 Brassicales-Malvales View MSA
124342277 5266 SBM View MSA
124240423 5268 Malvidae View MSA
124072619 5270 Rosid View MSA
123748072 5271 Pentapetalae View MSA
122787884 5272 Eudicot View MSA
122049105 5273 Angiosperm View MSA
121351479 5274 Embryophyte View MSA
123424532 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 14.884        
cufflinks 20.258        
cufflinks 14.665       Low
cufflinks 20.088        
cufflinks 15.708        
cufflinks 20.777       High

0 Strain