Gene : AT5G40490 A. thaliana TAIR10
Defline:  (1 of 1) PTHR24012//PTHR24012:SF426 - FAMILY NOT NAMED // RNA-BINDING PROTEIN-RELATED Genomic Order:  3358
Name:  ? AT5G40490 Secondary Identifier:  ? PAC:19666135
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G40490 0.5kb upstream 0.5kb upstream 2834 true Chr5: 16224876-16227709 Arabidopsis thaliana
AT5G40490 0.5kb upstream 0.5kb upstream 500 false Chr5: 16224876-16225375 Arabidopsis thaliana
AT5G40490 0.5kb downstream 0.5kb downstream 2834 true Chr5: 16225376-16228209 Arabidopsis thaliana
AT5G40490 0.5kb downstream 0.5kb downstream 500 false Chr5: 16227710-16228209 Arabidopsis thaliana
AT5G40490 1.0kb upstream 1.0kb upstream 3334 true Chr5: 16224376-16227709 Arabidopsis thaliana
AT5G40490 1.0kb upstream 1.0kb upstream 1000 false Chr5: 16224376-16225375 Arabidopsis thaliana
AT5G40490 1.0kb downstream 1.0kb downstream 3334 true Chr5: 16225376-16228709 Arabidopsis thaliana
AT5G40490 1.0kb downstream 1.0kb downstream 1000 false Chr5: 16227710-16228709 Arabidopsis thaliana
AT5G40490 2.0kb upstream 2.0kb upstream 4334 true Chr5: 16223376-16227709 Arabidopsis thaliana
AT5G40490 2.0kb upstream 2.0kb upstream 2000 false Chr5: 16223376-16225375 Arabidopsis thaliana
AT5G40490 2.0kb downstream 2.0kb downstream 4334 true Chr5: 16225376-16229709 Arabidopsis thaliana
AT5G40490 2.0kb downstream 2.0kb downstream 2000 false Chr5: 16227710-16229709 Arabidopsis thaliana
AT5G40490 5.0kb upstream 5.0kb upstream 7334 true Chr5: 16220376-16227709 Arabidopsis thaliana
AT5G40490 5.0kb upstream 5.0kb upstream 5000 false Chr5: 16220376-16225375 Arabidopsis thaliana
AT5G40490 5.0kb downstream 5.0kb downstream 7334 true Chr5: 16225376-16232709 Arabidopsis thaliana
AT5G40490 5.0kb downstream 5.0kb downstream 5000 false Chr5: 16227710-16232709 Arabidopsis thaliana
AT5G40490 10.0kb upstream 10.0kb upstream 12334 true Chr5: 16215376-16227709 Arabidopsis thaliana
AT5G40490 10.0kb upstream 10.0kb upstream 10000 false Chr5: 16215376-16225375 Arabidopsis thaliana
AT5G40490 10.0kb downstream 10.0kb downstream 12334 true Chr5: 16225376-16237709 Arabidopsis thaliana
AT5G40490 10.0kb downstream 10.0kb downstream 10000 false Chr5: 16227710-16237709 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122373933 5261 Brassicaceae View MSA
123834082 5264 Brassicales-Malvales View MSA
124321920 5266 SBM View MSA
124241384 5268 Malvidae View MSA
124068966 5270 Rosid View MSA
123749875 5271 Pentapetalae View MSA
122795873 5272 Eudicot View MSA
122049849 5273 Angiosperm View MSA
123429142 5275 Viridiplantae View MSA
121351304 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 12.245        
cufflinks 11.908        
cufflinks 11.108        
cufflinks 14.27       High
cufflinks 10.65       Low
cufflinks 14.143       High

0 Strain