Gene : AT5G40450 A. thaliana TAIR10
Genomic Order:  3354 Name:  ? AT5G40450
Secondary Identifier:  ? PAC:19667548
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G40450 0.5kb upstream 0.5kb upstream 11502 true Chr5: 16184650-16196151 Arabidopsis thaliana
AT5G40450 0.5kb upstream 0.5kb upstream 500 false Chr5: 16195652-16196151 Arabidopsis thaliana
AT5G40450 0.5kb downstream 0.5kb downstream 11502 true Chr5: 16184150-16195651 Arabidopsis thaliana
AT5G40450 0.5kb downstream 0.5kb downstream 500 false Chr5: 16184150-16184649 Arabidopsis thaliana
AT5G40450 1.0kb upstream 1.0kb upstream 12002 true Chr5: 16184650-16196651 Arabidopsis thaliana
AT5G40450 1.0kb upstream 1.0kb upstream 1000 false Chr5: 16195652-16196651 Arabidopsis thaliana
AT5G40450 1.0kb downstream 1.0kb downstream 12002 true Chr5: 16183650-16195651 Arabidopsis thaliana
AT5G40450 1.0kb downstream 1.0kb downstream 1000 false Chr5: 16183650-16184649 Arabidopsis thaliana
AT5G40450 2.0kb upstream 2.0kb upstream 13002 true Chr5: 16184650-16197651 Arabidopsis thaliana
AT5G40450 2.0kb upstream 2.0kb upstream 2000 false Chr5: 16195652-16197651 Arabidopsis thaliana
AT5G40450 2.0kb downstream 2.0kb downstream 13002 true Chr5: 16182650-16195651 Arabidopsis thaliana
AT5G40450 2.0kb downstream 2.0kb downstream 2000 false Chr5: 16182650-16184649 Arabidopsis thaliana
AT5G40450 5.0kb upstream 5.0kb upstream 16002 true Chr5: 16184650-16200651 Arabidopsis thaliana
AT5G40450 5.0kb upstream 5.0kb upstream 5000 false Chr5: 16195652-16200651 Arabidopsis thaliana
AT5G40450 5.0kb downstream 5.0kb downstream 16002 true Chr5: 16179650-16195651 Arabidopsis thaliana
AT5G40450 5.0kb downstream 5.0kb downstream 5000 false Chr5: 16179650-16184649 Arabidopsis thaliana
AT5G40450 10.0kb upstream 10.0kb upstream 21002 true Chr5: 16184650-16205651 Arabidopsis thaliana
AT5G40450 10.0kb upstream 10.0kb upstream 10000 false Chr5: 16195652-16205651 Arabidopsis thaliana
AT5G40450 10.0kb downstream 10.0kb downstream 21002 true Chr5: 16174650-16195651 Arabidopsis thaliana
AT5G40450 10.0kb downstream 10.0kb downstream 10000 false Chr5: 16174650-16184649 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122367915 5261 Brassicaceae View MSA
123799446 5264 Brassicales-Malvales View MSA
124348274 5266 SBM View MSA
124253318 5268 Malvidae View MSA
124069710 5270 Rosid View MSA
123736385 5271 Pentapetalae View MSA
122793379 5272 Eudicot View MSA
122050278 5273 Angiosperm View MSA
121311837 5274 Embryophyte View MSA
123349078 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 42.738     High  
cufflinks 47.814     High  
cufflinks 31.45     High  
cufflinks 54.021     High High
cufflinks 23.7       Low
cufflinks 44.519     High  

0 Strain