Gene : AT5G39580 A. thaliana TAIR10
Defline:  (1 of 4) PTHR31235//PTHR31235:SF27 - FAMILY NOT NAMED // PEROXIDASE 62-RELATED Genomic Order:  3263
Name:  ? AT5G39580 Secondary Identifier:  ? PAC:19670482
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3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana PWY-5466 Arabidopsis thaliana pathologic  
Athaliana PWY-7214 Arabidopsis thaliana pathologic  
Athaliana PWY-7445 Arabidopsis thaliana pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G39580 0.5kb upstream 0.5kb upstream 2531 true Chr5: 15847078-15849608 Arabidopsis thaliana
AT5G39580 0.5kb upstream 0.5kb upstream 500 false Chr5: 15849109-15849608 Arabidopsis thaliana
AT5G39580 0.5kb downstream 0.5kb downstream 2531 true Chr5: 15846578-15849108 Arabidopsis thaliana
AT5G39580 0.5kb downstream 0.5kb downstream 500 false Chr5: 15846578-15847077 Arabidopsis thaliana
AT5G39580 1.0kb upstream 1.0kb upstream 3031 true Chr5: 15847078-15850108 Arabidopsis thaliana
AT5G39580 1.0kb upstream 1.0kb upstream 1000 false Chr5: 15849109-15850108 Arabidopsis thaliana
AT5G39580 1.0kb downstream 1.0kb downstream 3031 true Chr5: 15846078-15849108 Arabidopsis thaliana
AT5G39580 1.0kb downstream 1.0kb downstream 1000 false Chr5: 15846078-15847077 Arabidopsis thaliana
AT5G39580 2.0kb upstream 2.0kb upstream 4031 true Chr5: 15847078-15851108 Arabidopsis thaliana
AT5G39580 2.0kb upstream 2.0kb upstream 2000 false Chr5: 15849109-15851108 Arabidopsis thaliana
AT5G39580 2.0kb downstream 2.0kb downstream 4031 true Chr5: 15845078-15849108 Arabidopsis thaliana
AT5G39580 2.0kb downstream 2.0kb downstream 2000 false Chr5: 15845078-15847077 Arabidopsis thaliana
AT5G39580 5.0kb upstream 5.0kb upstream 7031 true Chr5: 15847078-15854108 Arabidopsis thaliana
AT5G39580 5.0kb upstream 5.0kb upstream 5000 false Chr5: 15849109-15854108 Arabidopsis thaliana
AT5G39580 5.0kb downstream 5.0kb downstream 7031 true Chr5: 15842078-15849108 Arabidopsis thaliana
AT5G39580 5.0kb downstream 5.0kb downstream 5000 false Chr5: 15842078-15847077 Arabidopsis thaliana
AT5G39580 10.0kb upstream 10.0kb upstream 12031 true Chr5: 15847078-15859108 Arabidopsis thaliana
AT5G39580 10.0kb upstream 10.0kb upstream 10000 false Chr5: 15849109-15859108 Arabidopsis thaliana
AT5G39580 10.0kb downstream 10.0kb downstream 12031 true Chr5: 15837078-15849108 Arabidopsis thaliana
AT5G39580 10.0kb downstream 10.0kb downstream 10000 false Chr5: 15837078-15847077 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122377007 5261 Brassicaceae View MSA
123836413 5264 Brassicales-Malvales View MSA
124342166 5266 SBM View MSA
124248571 5268 Malvidae View MSA
124066864 5270 Rosid View MSA
123752607 5271 Pentapetalae View MSA
122796741 5272 Eudicot View MSA
122051577 5273 Angiosperm View MSA
121351674 5274 Embryophyte View MSA
123426672 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.103     Low  
cufflinks 0.36        
cufflinks 0.109     Low  
cufflinks 0.366     Low  
cufflinks 0.095     Low  
cufflinks 2.785       High

0 Strain