Gene : AT5G39050 A. thaliana TAIR10
Defline:  (1 of 11) PTHR31625//PTHR31625:SF5 - FAMILY NOT NAMED // ACYLTRANSFERASE-LIKE PROTEIN-RELATED Genomic Order:  3209
Name:  ? AT5G39050 Secondary Identifier:  ? PAC:19666425
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G39050 0.5kb upstream 0.5kb upstream 1980 true Chr5: 15634086-15636065 Arabidopsis thaliana
AT5G39050 0.5kb upstream 0.5kb upstream 500 false Chr5: 15634086-15634585 Arabidopsis thaliana
AT5G39050 0.5kb downstream 0.5kb downstream 1980 true Chr5: 15634586-15636565 Arabidopsis thaliana
AT5G39050 0.5kb downstream 0.5kb downstream 500 false Chr5: 15636066-15636565 Arabidopsis thaliana
AT5G39050 1.0kb upstream 1.0kb upstream 2480 true Chr5: 15633586-15636065 Arabidopsis thaliana
AT5G39050 1.0kb upstream 1.0kb upstream 1000 false Chr5: 15633586-15634585 Arabidopsis thaliana
AT5G39050 1.0kb downstream 1.0kb downstream 2480 true Chr5: 15634586-15637065 Arabidopsis thaliana
AT5G39050 1.0kb downstream 1.0kb downstream 1000 false Chr5: 15636066-15637065 Arabidopsis thaliana
AT5G39050 2.0kb upstream 2.0kb upstream 3480 true Chr5: 15632586-15636065 Arabidopsis thaliana
AT5G39050 2.0kb upstream 2.0kb upstream 2000 false Chr5: 15632586-15634585 Arabidopsis thaliana
AT5G39050 2.0kb downstream 2.0kb downstream 3480 true Chr5: 15634586-15638065 Arabidopsis thaliana
AT5G39050 2.0kb downstream 2.0kb downstream 2000 false Chr5: 15636066-15638065 Arabidopsis thaliana
AT5G39050 5.0kb upstream 5.0kb upstream 6480 true Chr5: 15629586-15636065 Arabidopsis thaliana
AT5G39050 5.0kb upstream 5.0kb upstream 5000 false Chr5: 15629586-15634585 Arabidopsis thaliana
AT5G39050 5.0kb downstream 5.0kb downstream 6480 true Chr5: 15634586-15641065 Arabidopsis thaliana
AT5G39050 5.0kb downstream 5.0kb downstream 5000 false Chr5: 15636066-15641065 Arabidopsis thaliana
AT5G39050 10.0kb upstream 10.0kb upstream 11480 true Chr5: 15624586-15636065 Arabidopsis thaliana
AT5G39050 10.0kb upstream 10.0kb upstream 10000 false Chr5: 15624586-15634585 Arabidopsis thaliana
AT5G39050 10.0kb downstream 10.0kb downstream 11480 true Chr5: 15634586-15646065 Arabidopsis thaliana
AT5G39050 10.0kb downstream 10.0kb downstream 10000 false Chr5: 15636066-15646065 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122378194 5261 Brassicaceae View MSA
123840075 5264 Brassicales-Malvales View MSA
124351480 5266 SBM View MSA
124250860 5268 Malvidae View MSA
124073771 5270 Rosid View MSA
123753544 5271 Pentapetalae View MSA
122797119 5272 Eudicot View MSA
122051643 5273 Angiosperm View MSA
121350983 5274 Embryophyte View MSA
123428782 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 29.475     High  
cufflinks 2.348        
cufflinks 23.121        
cufflinks 6.473        
cufflinks 42.64     High High
cufflinks 0.946       Low

0 Strain