Gene : AT5G39080 A. thaliana TAIR10
Defline:  (1 of 11) PTHR31625//PTHR31625:SF5 - FAMILY NOT NAMED // ACYLTRANSFERASE-LIKE PROTEIN-RELATED Genomic Order:  3210
Name:  ? AT5G39080 Secondary Identifier:  ? PAC:19669344
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G39080 0.5kb upstream 0.5kb upstream 2004 true Chr5: 15641158-15643161 Arabidopsis thaliana
AT5G39080 0.5kb upstream 0.5kb upstream 500 false Chr5: 15641158-15641657 Arabidopsis thaliana
AT5G39080 0.5kb downstream 0.5kb downstream 2004 true Chr5: 15641658-15643661 Arabidopsis thaliana
AT5G39080 0.5kb downstream 0.5kb downstream 500 false Chr5: 15643162-15643661 Arabidopsis thaliana
AT5G39080 1.0kb upstream 1.0kb upstream 2504 true Chr5: 15640658-15643161 Arabidopsis thaliana
AT5G39080 1.0kb upstream 1.0kb upstream 1000 false Chr5: 15640658-15641657 Arabidopsis thaliana
AT5G39080 1.0kb downstream 1.0kb downstream 2504 true Chr5: 15641658-15644161 Arabidopsis thaliana
AT5G39080 1.0kb downstream 1.0kb downstream 1000 false Chr5: 15643162-15644161 Arabidopsis thaliana
AT5G39080 2.0kb upstream 2.0kb upstream 3504 true Chr5: 15639658-15643161 Arabidopsis thaliana
AT5G39080 2.0kb upstream 2.0kb upstream 2000 false Chr5: 15639658-15641657 Arabidopsis thaliana
AT5G39080 2.0kb downstream 2.0kb downstream 3504 true Chr5: 15641658-15645161 Arabidopsis thaliana
AT5G39080 2.0kb downstream 2.0kb downstream 2000 false Chr5: 15643162-15645161 Arabidopsis thaliana
AT5G39080 5.0kb upstream 5.0kb upstream 6504 true Chr5: 15636658-15643161 Arabidopsis thaliana
AT5G39080 5.0kb upstream 5.0kb upstream 5000 false Chr5: 15636658-15641657 Arabidopsis thaliana
AT5G39080 5.0kb downstream 5.0kb downstream 6504 true Chr5: 15641658-15648161 Arabidopsis thaliana
AT5G39080 5.0kb downstream 5.0kb downstream 5000 false Chr5: 15643162-15648161 Arabidopsis thaliana
AT5G39080 10.0kb upstream 10.0kb upstream 11504 true Chr5: 15631658-15643161 Arabidopsis thaliana
AT5G39080 10.0kb upstream 10.0kb upstream 10000 false Chr5: 15631658-15641657 Arabidopsis thaliana
AT5G39080 10.0kb downstream 10.0kb downstream 11504 true Chr5: 15641658-15653161 Arabidopsis thaliana
AT5G39080 10.0kb downstream 10.0kb downstream 10000 false Chr5: 15643162-15653161 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122338661 5261 Brassicaceae View MSA
123779215 5264 Brassicales-Malvales View MSA
124277545 5266 SBM View MSA
124250860 5268 Malvidae View MSA
124073771 5270 Rosid View MSA
123753544 5271 Pentapetalae View MSA
122797119 5272 Eudicot View MSA
122051643 5273 Angiosperm View MSA
121350983 5274 Embryophyte View MSA
123428782 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 11.834        
cufflinks 0.02     Low Low
cufflinks 6.905        
cufflinks 0.202     Low  
cufflinks 12.47        
cufflinks 0.177     Low  

0 Strain