Gene : AT5G38930 A. thaliana TAIR10
Defline:  (1 of 6) PTHR31238//PTHR31238:SF42 - FAMILY NOT NAMED // GERMIN-LIKE PROTEIN SUBFAMILY 1 MEMBER 10-RELATED Genomic Order:  3196
Name:  ? AT5G38930 Secondary Identifier:  ? PAC:19669364
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G38930 0.5kb upstream 0.5kb upstream 1269 true Chr5: 15584573-15585841 Arabidopsis thaliana
AT5G38930 0.5kb upstream 0.5kb upstream 500 false Chr5: 15584573-15585072 Arabidopsis thaliana
AT5G38930 0.5kb downstream 0.5kb downstream 1269 true Chr5: 15585073-15586341 Arabidopsis thaliana
AT5G38930 0.5kb downstream 0.5kb downstream 500 false Chr5: 15585842-15586341 Arabidopsis thaliana
AT5G38930 1.0kb upstream 1.0kb upstream 1769 true Chr5: 15584073-15585841 Arabidopsis thaliana
AT5G38930 1.0kb upstream 1.0kb upstream 1000 false Chr5: 15584073-15585072 Arabidopsis thaliana
AT5G38930 1.0kb downstream 1.0kb downstream 1769 true Chr5: 15585073-15586841 Arabidopsis thaliana
AT5G38930 1.0kb downstream 1.0kb downstream 1000 false Chr5: 15585842-15586841 Arabidopsis thaliana
AT5G38930 2.0kb upstream 2.0kb upstream 2769 true Chr5: 15583073-15585841 Arabidopsis thaliana
AT5G38930 2.0kb upstream 2.0kb upstream 2000 false Chr5: 15583073-15585072 Arabidopsis thaliana
AT5G38930 2.0kb downstream 2.0kb downstream 2769 true Chr5: 15585073-15587841 Arabidopsis thaliana
AT5G38930 2.0kb downstream 2.0kb downstream 2000 false Chr5: 15585842-15587841 Arabidopsis thaliana
AT5G38930 5.0kb upstream 5.0kb upstream 5769 true Chr5: 15580073-15585841 Arabidopsis thaliana
AT5G38930 5.0kb upstream 5.0kb upstream 5000 false Chr5: 15580073-15585072 Arabidopsis thaliana
AT5G38930 5.0kb downstream 5.0kb downstream 5769 true Chr5: 15585073-15590841 Arabidopsis thaliana
AT5G38930 5.0kb downstream 5.0kb downstream 5000 false Chr5: 15585842-15590841 Arabidopsis thaliana
AT5G38930 10.0kb upstream 10.0kb upstream 10769 true Chr5: 15575073-15585841 Arabidopsis thaliana
AT5G38930 10.0kb upstream 10.0kb upstream 10000 false Chr5: 15575073-15585072 Arabidopsis thaliana
AT5G38930 10.0kb downstream 10.0kb downstream 10769 true Chr5: 15585073-15595841 Arabidopsis thaliana
AT5G38930 10.0kb downstream 10.0kb downstream 10000 false Chr5: 15585842-15595841 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122331204 5261 Brassicaceae Singleton cluster - no MSA
123772406 5264 Brassicales-Malvales Singleton cluster - no MSA
124270923 5266 SBM Singleton cluster - no MSA
124126964 5268 Malvidae Singleton cluster - no MSA
123855843 5270 Rosid Singleton cluster - no MSA
123441806 5271 Pentapetalae Singleton cluster - no MSA
122477388 5272 Eudicot Singleton cluster - no MSA
122049786 5273 Angiosperm View MSA
121349986 5274 Embryophyte View MSA
123427618 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.524       High
cufflinks 0.04     Low  
cufflinks 0.18     Low  
cufflinks 0.02     Low Low
cufflinks 0.331        
cufflinks 0.103     Low  

0 Strain