Gene : AT5G38830 A. thaliana TAIR10
Defline:  (1 of 3) 6.1.1.16 - Cysteine--tRNA ligase / Cysteinyl-tRNA synthetase Genomic Order:  3186
Name:  ? AT5G38830 Secondary Identifier:  ? PAC:19668040
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Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana TRNA-CHARGING-PWY Arabidopsis thaliana pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G38830 0.5kb upstream 0.5kb upstream 3118 true Chr5: 15545569-15548686 Arabidopsis thaliana
AT5G38830 0.5kb upstream 0.5kb upstream 500 false Chr5: 15548187-15548686 Arabidopsis thaliana
AT5G38830 0.5kb downstream 0.5kb downstream 3118 true Chr5: 15545069-15548186 Arabidopsis thaliana
AT5G38830 0.5kb downstream 0.5kb downstream 500 false Chr5: 15545069-15545568 Arabidopsis thaliana
AT5G38830 1.0kb upstream 1.0kb upstream 3618 true Chr5: 15545569-15549186 Arabidopsis thaliana
AT5G38830 1.0kb upstream 1.0kb upstream 1000 false Chr5: 15548187-15549186 Arabidopsis thaliana
AT5G38830 1.0kb downstream 1.0kb downstream 3618 true Chr5: 15544569-15548186 Arabidopsis thaliana
AT5G38830 1.0kb downstream 1.0kb downstream 1000 false Chr5: 15544569-15545568 Arabidopsis thaliana
AT5G38830 2.0kb upstream 2.0kb upstream 4618 true Chr5: 15545569-15550186 Arabidopsis thaliana
AT5G38830 2.0kb upstream 2.0kb upstream 2000 false Chr5: 15548187-15550186 Arabidopsis thaliana
AT5G38830 2.0kb downstream 2.0kb downstream 4618 true Chr5: 15543569-15548186 Arabidopsis thaliana
AT5G38830 2.0kb downstream 2.0kb downstream 2000 false Chr5: 15543569-15545568 Arabidopsis thaliana
AT5G38830 5.0kb upstream 5.0kb upstream 7618 true Chr5: 15545569-15553186 Arabidopsis thaliana
AT5G38830 5.0kb upstream 5.0kb upstream 5000 false Chr5: 15548187-15553186 Arabidopsis thaliana
AT5G38830 5.0kb downstream 5.0kb downstream 7618 true Chr5: 15540569-15548186 Arabidopsis thaliana
AT5G38830 5.0kb downstream 5.0kb downstream 5000 false Chr5: 15540569-15545568 Arabidopsis thaliana
AT5G38830 10.0kb upstream 10.0kb upstream 12618 true Chr5: 15545569-15558186 Arabidopsis thaliana
AT5G38830 10.0kb upstream 10.0kb upstream 10000 false Chr5: 15548187-15558186 Arabidopsis thaliana
AT5G38830 10.0kb downstream 10.0kb downstream 12618 true Chr5: 15535569-15548186 Arabidopsis thaliana
AT5G38830 10.0kb downstream 10.0kb downstream 10000 false Chr5: 15535569-15545568 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122374120 5261 Brassicaceae View MSA
123830894 5264 Brassicales-Malvales View MSA
124340438 5266 SBM View MSA
124250049 5268 Malvidae View MSA
124063129 5270 Rosid View MSA
123736819 5271 Pentapetalae View MSA
122791424 5272 Eudicot View MSA
122050932 5273 Angiosperm View MSA
121350340 5274 Embryophyte View MSA
123427761 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 18.728        
cufflinks 23.164        
cufflinks 14.728       Low
cufflinks 25.853        
cufflinks 16.28        
cufflinks 26.069       High

0 Strain