Gene : AT5G42390 A. thaliana TAIR10
Defline:  (1 of 1) PTHR11851:SF152 - PROTEIN UCR-2.3 Genomic Order:  3567
Name:  ? AT5G42390 Secondary Identifier:  ? PAC:19667521
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G42390 0.5kb upstream 0.5kb upstream 8350 true Chr5: 16944751-16953100 Arabidopsis thaliana
AT5G42390 0.5kb upstream 0.5kb upstream 500 false Chr5: 16944751-16945250 Arabidopsis thaliana
AT5G42390 0.5kb downstream 0.5kb downstream 8350 true Chr5: 16945251-16953600 Arabidopsis thaliana
AT5G42390 0.5kb downstream 0.5kb downstream 500 false Chr5: 16953101-16953600 Arabidopsis thaliana
AT5G42390 1.0kb upstream 1.0kb upstream 8850 true Chr5: 16944251-16953100 Arabidopsis thaliana
AT5G42390 1.0kb upstream 1.0kb upstream 1000 false Chr5: 16944251-16945250 Arabidopsis thaliana
AT5G42390 1.0kb downstream 1.0kb downstream 8850 true Chr5: 16945251-16954100 Arabidopsis thaliana
AT5G42390 1.0kb downstream 1.0kb downstream 1000 false Chr5: 16953101-16954100 Arabidopsis thaliana
AT5G42390 2.0kb upstream 2.0kb upstream 9850 true Chr5: 16943251-16953100 Arabidopsis thaliana
AT5G42390 2.0kb upstream 2.0kb upstream 2000 false Chr5: 16943251-16945250 Arabidopsis thaliana
AT5G42390 2.0kb downstream 2.0kb downstream 9850 true Chr5: 16945251-16955100 Arabidopsis thaliana
AT5G42390 2.0kb downstream 2.0kb downstream 2000 false Chr5: 16953101-16955100 Arabidopsis thaliana
AT5G42390 5.0kb upstream 5.0kb upstream 12850 true Chr5: 16940251-16953100 Arabidopsis thaliana
AT5G42390 5.0kb upstream 5.0kb upstream 5000 false Chr5: 16940251-16945250 Arabidopsis thaliana
AT5G42390 5.0kb downstream 5.0kb downstream 12850 true Chr5: 16945251-16958100 Arabidopsis thaliana
AT5G42390 5.0kb downstream 5.0kb downstream 5000 false Chr5: 16953101-16958100 Arabidopsis thaliana
AT5G42390 10.0kb upstream 10.0kb upstream 17850 true Chr5: 16935251-16953100 Arabidopsis thaliana
AT5G42390 10.0kb upstream 10.0kb upstream 10000 false Chr5: 16935251-16945250 Arabidopsis thaliana
AT5G42390 10.0kb downstream 10.0kb downstream 17850 true Chr5: 16945251-16963100 Arabidopsis thaliana
AT5G42390 10.0kb downstream 10.0kb downstream 10000 false Chr5: 16953101-16963100 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122374928 5261 Brassicaceae View MSA
123833601 5264 Brassicales-Malvales View MSA
124342109 5266 SBM View MSA
124237629 5268 Malvidae View MSA
124063909 5270 Rosid View MSA
123737862 5271 Pentapetalae View MSA
122791409 5272 Eudicot View MSA
122044944 5273 Angiosperm View MSA
121346655 5274 Embryophyte View MSA
123428815 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 37.547     High  
cufflinks 10.853        
cufflinks 37.15     High  
cufflinks 11.582        
cufflinks 39.031     High  
cufflinks 10.738        

0 Strain