Gene : AT5G41580 A. thaliana TAIR10
Defline:  (1 of 2) K04706 - E3 SUMO-protein ligase PIAS1 (PIAS1) Genomic Order:  3474
Name:  ? AT5G41580 Secondary Identifier:  ? PAC:19666811
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G41580 0.5kb upstream 0.5kb upstream 4947 true Chr5: 16626337-16631283 Arabidopsis thaliana
AT5G41580 0.5kb upstream 0.5kb upstream 500 false Chr5: 16630784-16631283 Arabidopsis thaliana
AT5G41580 0.5kb downstream 0.5kb downstream 4947 true Chr5: 16625837-16630783 Arabidopsis thaliana
AT5G41580 0.5kb downstream 0.5kb downstream 500 false Chr5: 16625837-16626336 Arabidopsis thaliana
AT5G41580 1.0kb upstream 1.0kb upstream 5447 true Chr5: 16626337-16631783 Arabidopsis thaliana
AT5G41580 1.0kb upstream 1.0kb upstream 1000 false Chr5: 16630784-16631783 Arabidopsis thaliana
AT5G41580 1.0kb downstream 1.0kb downstream 5447 true Chr5: 16625337-16630783 Arabidopsis thaliana
AT5G41580 1.0kb downstream 1.0kb downstream 1000 false Chr5: 16625337-16626336 Arabidopsis thaliana
AT5G41580 2.0kb upstream 2.0kb upstream 6447 true Chr5: 16626337-16632783 Arabidopsis thaliana
AT5G41580 2.0kb upstream 2.0kb upstream 2000 false Chr5: 16630784-16632783 Arabidopsis thaliana
AT5G41580 2.0kb downstream 2.0kb downstream 6447 true Chr5: 16624337-16630783 Arabidopsis thaliana
AT5G41580 2.0kb downstream 2.0kb downstream 2000 false Chr5: 16624337-16626336 Arabidopsis thaliana
AT5G41580 5.0kb upstream 5.0kb upstream 9447 true Chr5: 16626337-16635783 Arabidopsis thaliana
AT5G41580 5.0kb upstream 5.0kb upstream 5000 false Chr5: 16630784-16635783 Arabidopsis thaliana
AT5G41580 5.0kb downstream 5.0kb downstream 9447 true Chr5: 16621337-16630783 Arabidopsis thaliana
AT5G41580 5.0kb downstream 5.0kb downstream 5000 false Chr5: 16621337-16626336 Arabidopsis thaliana
AT5G41580 10.0kb upstream 10.0kb upstream 14447 true Chr5: 16626337-16640783 Arabidopsis thaliana
AT5G41580 10.0kb upstream 10.0kb upstream 10000 false Chr5: 16630784-16640783 Arabidopsis thaliana
AT5G41580 10.0kb downstream 10.0kb downstream 14447 true Chr5: 16616337-16630783 Arabidopsis thaliana
AT5G41580 10.0kb downstream 10.0kb downstream 10000 false Chr5: 16616337-16626336 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122374989 5261 Brassicaceae View MSA
123828908 5264 Brassicales-Malvales View MSA
124339563 5266 SBM View MSA
124238247 5268 Malvidae View MSA
124062957 5270 Rosid View MSA
123737680 5271 Pentapetalae View MSA
122797749 5272 Eudicot View MSA
122050924 5273 Angiosperm View MSA
121346660 5274 Embryophyte View MSA
123426833 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.162       Low
cufflinks 5.122        
cufflinks 2.645        
cufflinks 5.761       High
cufflinks 3.224        
cufflinks 4.994        

0 Strain