Gene : AT5G44180 A. thaliana TAIR10
Defline:  (1 of 1) PF00046//PF02791//PF05066//PF15613//PF15614 - Homeobox domain (Homeobox) // DDT domain (DDT) // HB1, ASXL, restriction endonuclease HTH domain (HARE-HTH) // WSTF, HB1, Itc1p, MBD9 motif 2 (WHIM2) // WSTF, HB1, Itc1p, MBD9 motif 3 (WHIM3) Genomic Order:  3774
Name:  ? AT5G44180 Secondary Identifier:  ? PAC:19669593
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G44180 0.5kb upstream 0.5kb upstream 7340 true Chr5: 17782672-17790011 Arabidopsis thaliana
AT5G44180 0.5kb upstream 0.5kb upstream 500 false Chr5: 17782672-17783171 Arabidopsis thaliana
AT5G44180 0.5kb downstream 0.5kb downstream 7340 true Chr5: 17783172-17790511 Arabidopsis thaliana
AT5G44180 0.5kb downstream 0.5kb downstream 500 false Chr5: 17790012-17790511 Arabidopsis thaliana
AT5G44180 1.0kb upstream 1.0kb upstream 7840 true Chr5: 17782172-17790011 Arabidopsis thaliana
AT5G44180 1.0kb upstream 1.0kb upstream 1000 false Chr5: 17782172-17783171 Arabidopsis thaliana
AT5G44180 1.0kb downstream 1.0kb downstream 7840 true Chr5: 17783172-17791011 Arabidopsis thaliana
AT5G44180 1.0kb downstream 1.0kb downstream 1000 false Chr5: 17790012-17791011 Arabidopsis thaliana
AT5G44180 2.0kb upstream 2.0kb upstream 8840 true Chr5: 17781172-17790011 Arabidopsis thaliana
AT5G44180 2.0kb upstream 2.0kb upstream 2000 false Chr5: 17781172-17783171 Arabidopsis thaliana
AT5G44180 2.0kb downstream 2.0kb downstream 8840 true Chr5: 17783172-17792011 Arabidopsis thaliana
AT5G44180 2.0kb downstream 2.0kb downstream 2000 false Chr5: 17790012-17792011 Arabidopsis thaliana
AT5G44180 5.0kb upstream 5.0kb upstream 11840 true Chr5: 17778172-17790011 Arabidopsis thaliana
AT5G44180 5.0kb upstream 5.0kb upstream 5000 false Chr5: 17778172-17783171 Arabidopsis thaliana
AT5G44180 5.0kb downstream 5.0kb downstream 11840 true Chr5: 17783172-17795011 Arabidopsis thaliana
AT5G44180 5.0kb downstream 5.0kb downstream 5000 false Chr5: 17790012-17795011 Arabidopsis thaliana
AT5G44180 10.0kb upstream 10.0kb upstream 16840 true Chr5: 17773172-17790011 Arabidopsis thaliana
AT5G44180 10.0kb upstream 10.0kb upstream 10000 false Chr5: 17773172-17783171 Arabidopsis thaliana
AT5G44180 10.0kb downstream 10.0kb downstream 16840 true Chr5: 17783172-17800011 Arabidopsis thaliana
AT5G44180 10.0kb downstream 10.0kb downstream 10000 false Chr5: 17790012-17800011 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122364572 5261 Brassicaceae View MSA
123831708 5264 Brassicales-Malvales View MSA
124345417 5266 SBM View MSA
124244144 5268 Malvidae View MSA
124069157 5270 Rosid View MSA
123743717 5271 Pentapetalae View MSA
122786620 5272 Eudicot View MSA
122044576 5273 Angiosperm View MSA
121345296 5274 Embryophyte View MSA
123427491 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.816        
cufflinks 7.211        
cufflinks 4.319       Low
cufflinks 7.863       High
cufflinks 4.774        
cufflinks 7.036        

0 Strain