Gene : AT5G43930 A. thaliana TAIR10
Defline:  (1 of 2) K17985 - activating molecule in BECN1-regulated autophagy protein 1 (AMBRA1) Genomic Order:  3746
Name:  ? AT5G43930 Secondary Identifier:  ? PAC:19670765
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G43930 0.5kb upstream 0.5kb upstream 4785 true Chr5: 17676316-17681100 Arabidopsis thaliana
AT5G43930 0.5kb upstream 0.5kb upstream 500 false Chr5: 17676316-17676815 Arabidopsis thaliana
AT5G43930 0.5kb downstream 0.5kb downstream 4785 true Chr5: 17676816-17681600 Arabidopsis thaliana
AT5G43930 0.5kb downstream 0.5kb downstream 500 false Chr5: 17681101-17681600 Arabidopsis thaliana
AT5G43930 1.0kb upstream 1.0kb upstream 5285 true Chr5: 17675816-17681100 Arabidopsis thaliana
AT5G43930 1.0kb upstream 1.0kb upstream 1000 false Chr5: 17675816-17676815 Arabidopsis thaliana
AT5G43930 1.0kb downstream 1.0kb downstream 5285 true Chr5: 17676816-17682100 Arabidopsis thaliana
AT5G43930 1.0kb downstream 1.0kb downstream 1000 false Chr5: 17681101-17682100 Arabidopsis thaliana
AT5G43930 2.0kb upstream 2.0kb upstream 6285 true Chr5: 17674816-17681100 Arabidopsis thaliana
AT5G43930 2.0kb upstream 2.0kb upstream 2000 false Chr5: 17674816-17676815 Arabidopsis thaliana
AT5G43930 2.0kb downstream 2.0kb downstream 6285 true Chr5: 17676816-17683100 Arabidopsis thaliana
AT5G43930 2.0kb downstream 2.0kb downstream 2000 false Chr5: 17681101-17683100 Arabidopsis thaliana
AT5G43930 5.0kb upstream 5.0kb upstream 9285 true Chr5: 17671816-17681100 Arabidopsis thaliana
AT5G43930 5.0kb upstream 5.0kb upstream 5000 false Chr5: 17671816-17676815 Arabidopsis thaliana
AT5G43930 5.0kb downstream 5.0kb downstream 9285 true Chr5: 17676816-17686100 Arabidopsis thaliana
AT5G43930 5.0kb downstream 5.0kb downstream 5000 false Chr5: 17681101-17686100 Arabidopsis thaliana
AT5G43930 10.0kb upstream 10.0kb upstream 14285 true Chr5: 17666816-17681100 Arabidopsis thaliana
AT5G43930 10.0kb upstream 10.0kb upstream 10000 false Chr5: 17666816-17676815 Arabidopsis thaliana
AT5G43930 10.0kb downstream 10.0kb downstream 14285 true Chr5: 17676816-17691100 Arabidopsis thaliana
AT5G43930 10.0kb downstream 10.0kb downstream 10000 false Chr5: 17681101-17691100 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122380654 5261 Brassicaceae View MSA
123839592 5264 Brassicales-Malvales View MSA
124347683 5266 SBM View MSA
124246956 5268 Malvidae View MSA
124072284 5270 Rosid View MSA
123744540 5271 Pentapetalae View MSA
122788668 5272 Eudicot View MSA
122045725 5273 Angiosperm View MSA
121344183 5274 Embryophyte View MSA
123426396 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.817        
cufflinks 3.152       High
cufflinks 1.676       Low
cufflinks 3.212       High
cufflinks 2.015        
cufflinks 2.206        

0 Strain