Gene : AT5G43160 A. thaliana TAIR10
Defline:  (1 of 1) PTHR31807:SF8 - QWRF MOTIF-CONTAINING PROTEIN 9 Genomic Order:  3658
Name:  ? AT5G43160 Secondary Identifier:  ? PAC:19671584
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G43160 0.5kb upstream 0.5kb upstream 2578 true Chr5: 17328775-17331352 Arabidopsis thaliana
AT5G43160 0.5kb upstream 0.5kb upstream 500 false Chr5: 17328775-17329274 Arabidopsis thaliana
AT5G43160 0.5kb downstream 0.5kb downstream 2578 true Chr5: 17329275-17331852 Arabidopsis thaliana
AT5G43160 0.5kb downstream 0.5kb downstream 500 false Chr5: 17331353-17331852 Arabidopsis thaliana
AT5G43160 1.0kb upstream 1.0kb upstream 3078 true Chr5: 17328275-17331352 Arabidopsis thaliana
AT5G43160 1.0kb upstream 1.0kb upstream 1000 false Chr5: 17328275-17329274 Arabidopsis thaliana
AT5G43160 1.0kb downstream 1.0kb downstream 3078 true Chr5: 17329275-17332352 Arabidopsis thaliana
AT5G43160 1.0kb downstream 1.0kb downstream 1000 false Chr5: 17331353-17332352 Arabidopsis thaliana
AT5G43160 2.0kb upstream 2.0kb upstream 4078 true Chr5: 17327275-17331352 Arabidopsis thaliana
AT5G43160 2.0kb upstream 2.0kb upstream 2000 false Chr5: 17327275-17329274 Arabidopsis thaliana
AT5G43160 2.0kb downstream 2.0kb downstream 4078 true Chr5: 17329275-17333352 Arabidopsis thaliana
AT5G43160 2.0kb downstream 2.0kb downstream 2000 false Chr5: 17331353-17333352 Arabidopsis thaliana
AT5G43160 5.0kb upstream 5.0kb upstream 7078 true Chr5: 17324275-17331352 Arabidopsis thaliana
AT5G43160 5.0kb upstream 5.0kb upstream 5000 false Chr5: 17324275-17329274 Arabidopsis thaliana
AT5G43160 5.0kb downstream 5.0kb downstream 7078 true Chr5: 17329275-17336352 Arabidopsis thaliana
AT5G43160 5.0kb downstream 5.0kb downstream 5000 false Chr5: 17331353-17336352 Arabidopsis thaliana
AT5G43160 10.0kb upstream 10.0kb upstream 12078 true Chr5: 17319275-17331352 Arabidopsis thaliana
AT5G43160 10.0kb upstream 10.0kb upstream 10000 false Chr5: 17319275-17329274 Arabidopsis thaliana
AT5G43160 10.0kb downstream 10.0kb downstream 12078 true Chr5: 17329275-17341352 Arabidopsis thaliana
AT5G43160 10.0kb downstream 10.0kb downstream 10000 false Chr5: 17331353-17341352 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122331382 5261 Brassicaceae Singleton cluster - no MSA
123772571 5264 Brassicales-Malvales Singleton cluster - no MSA
124350046 5266 SBM View MSA
124237661 5268 Malvidae View MSA
124050456 5270 Rosid View MSA
123752575 5271 Pentapetalae View MSA
122788375 5272 Eudicot View MSA
122044458 5273 Angiosperm View MSA
121348675 5274 Embryophyte View MSA
123426167 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.762        
cufflinks 6.972       High
cufflinks 2.277       Low
cufflinks 6.223        
cufflinks 2.948        
cufflinks 6.047        

0 Strain