Gene : AT5G43240 A. thaliana TAIR10
Defline:  (1 of 9) PTHR33103//PTHR33103:SF4 - FAMILY NOT NAMED // EMB|CAB69840.1 Genomic Order:  3668
Name:  ? AT5G43240 Secondary Identifier:  ? PAC:19667007
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G43240 0.5kb upstream 0.5kb upstream 2637 true Chr5: 17352986-17355622 Arabidopsis thaliana
AT5G43240 0.5kb upstream 0.5kb upstream 500 false Chr5: 17355123-17355622 Arabidopsis thaliana
AT5G43240 0.5kb downstream 0.5kb downstream 2637 true Chr5: 17352486-17355122 Arabidopsis thaliana
AT5G43240 0.5kb downstream 0.5kb downstream 500 false Chr5: 17352486-17352985 Arabidopsis thaliana
AT5G43240 1.0kb upstream 1.0kb upstream 3137 true Chr5: 17352986-17356122 Arabidopsis thaliana
AT5G43240 1.0kb upstream 1.0kb upstream 1000 false Chr5: 17355123-17356122 Arabidopsis thaliana
AT5G43240 1.0kb downstream 1.0kb downstream 3137 true Chr5: 17351986-17355122 Arabidopsis thaliana
AT5G43240 1.0kb downstream 1.0kb downstream 1000 false Chr5: 17351986-17352985 Arabidopsis thaliana
AT5G43240 2.0kb upstream 2.0kb upstream 4137 true Chr5: 17352986-17357122 Arabidopsis thaliana
AT5G43240 2.0kb upstream 2.0kb upstream 2000 false Chr5: 17355123-17357122 Arabidopsis thaliana
AT5G43240 2.0kb downstream 2.0kb downstream 4137 true Chr5: 17350986-17355122 Arabidopsis thaliana
AT5G43240 2.0kb downstream 2.0kb downstream 2000 false Chr5: 17350986-17352985 Arabidopsis thaliana
AT5G43240 5.0kb upstream 5.0kb upstream 7137 true Chr5: 17352986-17360122 Arabidopsis thaliana
AT5G43240 5.0kb upstream 5.0kb upstream 5000 false Chr5: 17355123-17360122 Arabidopsis thaliana
AT5G43240 5.0kb downstream 5.0kb downstream 7137 true Chr5: 17347986-17355122 Arabidopsis thaliana
AT5G43240 5.0kb downstream 5.0kb downstream 5000 false Chr5: 17347986-17352985 Arabidopsis thaliana
AT5G43240 10.0kb upstream 10.0kb upstream 12137 true Chr5: 17352986-17365122 Arabidopsis thaliana
AT5G43240 10.0kb upstream 10.0kb upstream 10000 false Chr5: 17355123-17365122 Arabidopsis thaliana
AT5G43240 10.0kb downstream 10.0kb downstream 12137 true Chr5: 17342986-17355122 Arabidopsis thaliana
AT5G43240 10.0kb downstream 10.0kb downstream 10000 false Chr5: 17342986-17352985 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122029295 5273 Angiosperm View MSA
122380445 5261 Brassicaceae View MSA
123839736 5264 Brassicales-Malvales View MSA
124322643 5266 SBM View MSA
124244931 5268 Malvidae View MSA
124073247 5270 Rosid View MSA
123752528 5271 Pentapetalae View MSA
122797868 5272 Eudicot View MSA
121350471 5274 Embryophyte View MSA
123381749 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.085     Low High
cufflinks 0.018     Low  
cufflinks 0.034     Low  
cufflinks 0.013     Low  
cufflinks 0.01     Low Low
cufflinks 0.024     Low  

0 Strain