Gene : AT5G43060 A. thaliana TAIR10
Defline:  (1 of 4) PTHR12411:SF344 - CYSTEINE PROTEASE COMPONENT OF PROTEASE-INHIBITOR COMPLEX-RELATED Genomic Order:  3647
Name:  ? AT5G43060 Secondary Identifier:  ? PAC:19668009
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G43060 0.5kb upstream 0.5kb upstream 3158 true Chr5: 17269507-17272664 Arabidopsis thaliana
AT5G43060 0.5kb upstream 0.5kb upstream 500 false Chr5: 17272165-17272664 Arabidopsis thaliana
AT5G43060 0.5kb downstream 0.5kb downstream 3158 true Chr5: 17269007-17272164 Arabidopsis thaliana
AT5G43060 0.5kb downstream 0.5kb downstream 500 false Chr5: 17269007-17269506 Arabidopsis thaliana
AT5G43060 1.0kb upstream 1.0kb upstream 3658 true Chr5: 17269507-17273164 Arabidopsis thaliana
AT5G43060 1.0kb upstream 1.0kb upstream 1000 false Chr5: 17272165-17273164 Arabidopsis thaliana
AT5G43060 1.0kb downstream 1.0kb downstream 3658 true Chr5: 17268507-17272164 Arabidopsis thaliana
AT5G43060 1.0kb downstream 1.0kb downstream 1000 false Chr5: 17268507-17269506 Arabidopsis thaliana
AT5G43060 2.0kb upstream 2.0kb upstream 4658 true Chr5: 17269507-17274164 Arabidopsis thaliana
AT5G43060 2.0kb upstream 2.0kb upstream 2000 false Chr5: 17272165-17274164 Arabidopsis thaliana
AT5G43060 2.0kb downstream 2.0kb downstream 4658 true Chr5: 17267507-17272164 Arabidopsis thaliana
AT5G43060 2.0kb downstream 2.0kb downstream 2000 false Chr5: 17267507-17269506 Arabidopsis thaliana
AT5G43060 5.0kb upstream 5.0kb upstream 7658 true Chr5: 17269507-17277164 Arabidopsis thaliana
AT5G43060 5.0kb upstream 5.0kb upstream 5000 false Chr5: 17272165-17277164 Arabidopsis thaliana
AT5G43060 5.0kb downstream 5.0kb downstream 7658 true Chr5: 17264507-17272164 Arabidopsis thaliana
AT5G43060 5.0kb downstream 5.0kb downstream 5000 false Chr5: 17264507-17269506 Arabidopsis thaliana
AT5G43060 10.0kb upstream 10.0kb upstream 12658 true Chr5: 17269507-17282164 Arabidopsis thaliana
AT5G43060 10.0kb upstream 10.0kb upstream 10000 false Chr5: 17272165-17282164 Arabidopsis thaliana
AT5G43060 10.0kb downstream 10.0kb downstream 12658 true Chr5: 17259507-17272164 Arabidopsis thaliana
AT5G43060 10.0kb downstream 10.0kb downstream 10000 false Chr5: 17259507-17269506 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122361020 5261 Brassicaceae View MSA
123798084 5264 Brassicales-Malvales View MSA
124295762 5266 SBM View MSA
124247983 5268 Malvidae View MSA
124071516 5270 Rosid View MSA
123751389 5271 Pentapetalae View MSA
122796567 5272 Eudicot View MSA
122043914 5273 Angiosperm View MSA
123428950 5275 Viridiplantae View MSA
121348634 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 15.219        
cufflinks 60.319     High  
cufflinks 9.495       Low
cufflinks 71.441     High  
cufflinks 10.341        
cufflinks 84.541     High High

0 Strain