Gene : AT5G45700 A. thaliana TAIR10
Defline:  (1 of 4) K15731 - carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase [EC:3.1.3.16] (CTDSP) Genomic Order:  3946
Name:  ? AT5G45700 Secondary Identifier:  ? PAC:19673189
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G45700 0.5kb upstream 0.5kb upstream 1348 true Chr5: 18536849-18538196 Arabidopsis thaliana
AT5G45700 0.5kb upstream 0.5kb upstream 500 false Chr5: 18536849-18537348 Arabidopsis thaliana
AT5G45700 0.5kb downstream 0.5kb downstream 1348 true Chr5: 18537349-18538696 Arabidopsis thaliana
AT5G45700 0.5kb downstream 0.5kb downstream 500 false Chr5: 18538197-18538696 Arabidopsis thaliana
AT5G45700 1.0kb upstream 1.0kb upstream 1848 true Chr5: 18536349-18538196 Arabidopsis thaliana
AT5G45700 1.0kb upstream 1.0kb upstream 1000 false Chr5: 18536349-18537348 Arabidopsis thaliana
AT5G45700 1.0kb downstream 1.0kb downstream 1848 true Chr5: 18537349-18539196 Arabidopsis thaliana
AT5G45700 1.0kb downstream 1.0kb downstream 1000 false Chr5: 18538197-18539196 Arabidopsis thaliana
AT5G45700 2.0kb upstream 2.0kb upstream 2848 true Chr5: 18535349-18538196 Arabidopsis thaliana
AT5G45700 2.0kb upstream 2.0kb upstream 2000 false Chr5: 18535349-18537348 Arabidopsis thaliana
AT5G45700 2.0kb downstream 2.0kb downstream 2848 true Chr5: 18537349-18540196 Arabidopsis thaliana
AT5G45700 2.0kb downstream 2.0kb downstream 2000 false Chr5: 18538197-18540196 Arabidopsis thaliana
AT5G45700 5.0kb upstream 5.0kb upstream 5848 true Chr5: 18532349-18538196 Arabidopsis thaliana
AT5G45700 5.0kb upstream 5.0kb upstream 5000 false Chr5: 18532349-18537348 Arabidopsis thaliana
AT5G45700 5.0kb downstream 5.0kb downstream 5848 true Chr5: 18537349-18543196 Arabidopsis thaliana
AT5G45700 5.0kb downstream 5.0kb downstream 5000 false Chr5: 18538197-18543196 Arabidopsis thaliana
AT5G45700 10.0kb upstream 10.0kb upstream 10848 true Chr5: 18527349-18538196 Arabidopsis thaliana
AT5G45700 10.0kb upstream 10.0kb upstream 10000 false Chr5: 18527349-18537348 Arabidopsis thaliana
AT5G45700 10.0kb downstream 10.0kb downstream 10848 true Chr5: 18537349-18548196 Arabidopsis thaliana
AT5G45700 10.0kb downstream 10.0kb downstream 10000 false Chr5: 18538197-18548196 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122367998 5261 Brassicaceae View MSA
123837754 5264 Brassicales-Malvales View MSA
124340022 5266 SBM View MSA
124237872 5268 Malvidae View MSA
124050168 5270 Rosid View MSA
123737409 5271 Pentapetalae View MSA
122787896 5272 Eudicot View MSA
122044023 5273 Angiosperm View MSA
123429149 5275 Viridiplantae View MSA
121350808 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.517        
cufflinks 17.878        
cufflinks 2.941        
cufflinks 12.053        
cufflinks 1.793       Low
cufflinks 28.712       High

0 Strain