Gene : TTR1 A. thaliana TAIR10
Primary Identifier:  ? AT5G45050 Defline:  (1 of 2) PF00931//PF03106//PF07725 - NB-ARC domain (NB-ARC) // WRKY DNA -binding domain (WRKY) // Leucine Rich Repeat (LRR_3)
Genomic Order:  3875 Name:  ? AT5G45050
Secondary Identifier:  ? PAC:19670641
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3 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G45050 0.5kb upstream 0.5kb upstream 5392 true Chr5: 18176914-18182305 Arabidopsis thaliana
AT5G45050 0.5kb upstream 0.5kb upstream 500 false Chr5: 18181806-18182305 Arabidopsis thaliana
AT5G45050 0.5kb downstream 0.5kb downstream 5392 true Chr5: 18176414-18181805 Arabidopsis thaliana
AT5G45050 0.5kb downstream 0.5kb downstream 500 false Chr5: 18176414-18176913 Arabidopsis thaliana
AT5G45050 1.0kb upstream 1.0kb upstream 5892 true Chr5: 18176914-18182805 Arabidopsis thaliana
AT5G45050 1.0kb upstream 1.0kb upstream 1000 false Chr5: 18181806-18182805 Arabidopsis thaliana
AT5G45050 1.0kb downstream 1.0kb downstream 5892 true Chr5: 18175914-18181805 Arabidopsis thaliana
AT5G45050 1.0kb downstream 1.0kb downstream 1000 false Chr5: 18175914-18176913 Arabidopsis thaliana
AT5G45050 2.0kb upstream 2.0kb upstream 6892 true Chr5: 18176914-18183805 Arabidopsis thaliana
AT5G45050 2.0kb upstream 2.0kb upstream 2000 false Chr5: 18181806-18183805 Arabidopsis thaliana
AT5G45050 2.0kb downstream 2.0kb downstream 6892 true Chr5: 18174914-18181805 Arabidopsis thaliana
AT5G45050 2.0kb downstream 2.0kb downstream 2000 false Chr5: 18174914-18176913 Arabidopsis thaliana
AT5G45050 5.0kb upstream 5.0kb upstream 9892 true Chr5: 18176914-18186805 Arabidopsis thaliana
AT5G45050 5.0kb upstream 5.0kb upstream 5000 false Chr5: 18181806-18186805 Arabidopsis thaliana
AT5G45050 5.0kb downstream 5.0kb downstream 9892 true Chr5: 18171914-18181805 Arabidopsis thaliana
AT5G45050 5.0kb downstream 5.0kb downstream 5000 false Chr5: 18171914-18176913 Arabidopsis thaliana
AT5G45050 10.0kb upstream 10.0kb upstream 14892 true Chr5: 18176914-18191805 Arabidopsis thaliana
AT5G45050 10.0kb upstream 10.0kb upstream 10000 false Chr5: 18181806-18191805 Arabidopsis thaliana
AT5G45050 10.0kb downstream 10.0kb downstream 14892 true Chr5: 18166914-18181805 Arabidopsis thaliana
AT5G45050 10.0kb downstream 10.0kb downstream 10000 false Chr5: 18166914-18176913 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121511441 5273 Angiosperm View MSA
122376235 5261 Brassicaceae View MSA
123801184 5264 Brassicales-Malvales View MSA
124298517 5266 SBM View MSA
124150142 5268 Malvidae View MSA
123875813 5270 Rosid View MSA
123459579 5271 Pentapetalae View MSA
122494969 5272 Eudicot View MSA
120784488 5274 Embryophyte View MSA
122826398 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.463       High
cufflinks 3.914        
cufflinks 3.55        
cufflinks 3.72        
cufflinks 3.889        
cufflinks 3.113       Low

0 Strain