Gene : RHA1 A. thaliana TAIR10
Primary Identifier:  ? AT5G45130 Defline:  (1 of 2) K07889 - Ras-related protein Rab-5C (RAB5C)
Genomic Order:  3886 Name:  ? AT5G45130
Secondary Identifier:  ? PAC:19665684
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7 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G45130 0.5kb upstream 0.5kb upstream 2685 true Chr5: 18243766-18246450 Arabidopsis thaliana
AT5G45130 0.5kb upstream 0.5kb upstream 500 false Chr5: 18243766-18244265 Arabidopsis thaliana
AT5G45130 0.5kb downstream 0.5kb downstream 2685 true Chr5: 18244266-18246950 Arabidopsis thaliana
AT5G45130 0.5kb downstream 0.5kb downstream 500 false Chr5: 18246451-18246950 Arabidopsis thaliana
AT5G45130 1.0kb upstream 1.0kb upstream 3185 true Chr5: 18243266-18246450 Arabidopsis thaliana
AT5G45130 1.0kb upstream 1.0kb upstream 1000 false Chr5: 18243266-18244265 Arabidopsis thaliana
AT5G45130 1.0kb downstream 1.0kb downstream 3185 true Chr5: 18244266-18247450 Arabidopsis thaliana
AT5G45130 1.0kb downstream 1.0kb downstream 1000 false Chr5: 18246451-18247450 Arabidopsis thaliana
AT5G45130 2.0kb upstream 2.0kb upstream 4185 true Chr5: 18242266-18246450 Arabidopsis thaliana
AT5G45130 2.0kb upstream 2.0kb upstream 2000 false Chr5: 18242266-18244265 Arabidopsis thaliana
AT5G45130 2.0kb downstream 2.0kb downstream 4185 true Chr5: 18244266-18248450 Arabidopsis thaliana
AT5G45130 2.0kb downstream 2.0kb downstream 2000 false Chr5: 18246451-18248450 Arabidopsis thaliana
AT5G45130 5.0kb upstream 5.0kb upstream 7185 true Chr5: 18239266-18246450 Arabidopsis thaliana
AT5G45130 5.0kb upstream 5.0kb upstream 5000 false Chr5: 18239266-18244265 Arabidopsis thaliana
AT5G45130 5.0kb downstream 5.0kb downstream 7185 true Chr5: 18244266-18251450 Arabidopsis thaliana
AT5G45130 5.0kb downstream 5.0kb downstream 5000 false Chr5: 18246451-18251450 Arabidopsis thaliana
AT5G45130 10.0kb upstream 10.0kb upstream 12185 true Chr5: 18234266-18246450 Arabidopsis thaliana
AT5G45130 10.0kb upstream 10.0kb upstream 10000 false Chr5: 18234266-18244265 Arabidopsis thaliana
AT5G45130 10.0kb downstream 10.0kb downstream 12185 true Chr5: 18244266-18256450 Arabidopsis thaliana
AT5G45130 10.0kb downstream 10.0kb downstream 10000 false Chr5: 18246451-18256450 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122361164 5261 Brassicaceae View MSA
123836956 5264 Brassicales-Malvales View MSA
124346320 5266 SBM View MSA
124254268 5268 Malvidae View MSA
124066553 5270 Rosid View MSA
123753240 5271 Pentapetalae View MSA
122795840 5272 Eudicot View MSA
122049622 5273 Angiosperm View MSA
121344376 5274 Embryophyte View MSA
123424016 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 34.458     High  
cufflinks 45.378     High  
cufflinks 24.99       Low
cufflinks 48.529     High High
cufflinks 28.867     High  
cufflinks 41.431     High  

0 Strain