Gene : AT5G47540 A. thaliana TAIR10
Defline:  (1 of 4) K08272 - calcium binding protein 39 (CAB39, MO25) Genomic Order:  4147
Name:  ? AT5G47540 Secondary Identifier:  ? PAC:19670293
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G47540 0.5kb upstream 0.5kb upstream 3170 true Chr5: 19283029-19286198 Arabidopsis thaliana
AT5G47540 0.5kb upstream 0.5kb upstream 500 false Chr5: 19285699-19286198 Arabidopsis thaliana
AT5G47540 0.5kb downstream 0.5kb downstream 3170 true Chr5: 19282529-19285698 Arabidopsis thaliana
AT5G47540 0.5kb downstream 0.5kb downstream 500 false Chr5: 19282529-19283028 Arabidopsis thaliana
AT5G47540 1.0kb upstream 1.0kb upstream 3670 true Chr5: 19283029-19286698 Arabidopsis thaliana
AT5G47540 1.0kb upstream 1.0kb upstream 1000 false Chr5: 19285699-19286698 Arabidopsis thaliana
AT5G47540 1.0kb downstream 1.0kb downstream 3670 true Chr5: 19282029-19285698 Arabidopsis thaliana
AT5G47540 1.0kb downstream 1.0kb downstream 1000 false Chr5: 19282029-19283028 Arabidopsis thaliana
AT5G47540 2.0kb upstream 2.0kb upstream 4670 true Chr5: 19283029-19287698 Arabidopsis thaliana
AT5G47540 2.0kb upstream 2.0kb upstream 2000 false Chr5: 19285699-19287698 Arabidopsis thaliana
AT5G47540 2.0kb downstream 2.0kb downstream 4670 true Chr5: 19281029-19285698 Arabidopsis thaliana
AT5G47540 2.0kb downstream 2.0kb downstream 2000 false Chr5: 19281029-19283028 Arabidopsis thaliana
AT5G47540 5.0kb upstream 5.0kb upstream 7670 true Chr5: 19283029-19290698 Arabidopsis thaliana
AT5G47540 5.0kb upstream 5.0kb upstream 5000 false Chr5: 19285699-19290698 Arabidopsis thaliana
AT5G47540 5.0kb downstream 5.0kb downstream 7670 true Chr5: 19278029-19285698 Arabidopsis thaliana
AT5G47540 5.0kb downstream 5.0kb downstream 5000 false Chr5: 19278029-19283028 Arabidopsis thaliana
AT5G47540 10.0kb upstream 10.0kb upstream 12670 true Chr5: 19283029-19295698 Arabidopsis thaliana
AT5G47540 10.0kb upstream 10.0kb upstream 10000 false Chr5: 19285699-19295698 Arabidopsis thaliana
AT5G47540 10.0kb downstream 10.0kb downstream 12670 true Chr5: 19273029-19285698 Arabidopsis thaliana
AT5G47540 10.0kb downstream 10.0kb downstream 10000 false Chr5: 19273029-19283028 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122380504 5261 Brassicaceae View MSA
123835895 5264 Brassicales-Malvales View MSA
124347368 5266 SBM View MSA
124249856 5268 Malvidae View MSA
124074299 5270 Rosid View MSA
123751491 5271 Pentapetalae View MSA
122797586 5272 Eudicot View MSA
122044464 5273 Angiosperm View MSA
121347752 5274 Embryophyte View MSA
123425225 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 12.935        
cufflinks 9.678       Low
cufflinks 15.157       High
cufflinks 9.716       Low
cufflinks 12.327        
cufflinks 11.492        

0 Strain