Gene : AT5G46910 A. thaliana TAIR10
Defline:  (1 of 1) PTHR10694:SF33 - TRANSCRIPTION FACTOR JUMONJI (JMJ) FAMILY PROTEIN / ZINC FINGER (C5HC2 TYPE) FAMILY PROTEIN Genomic Order:  4078
Name:  ? AT5G46910 Secondary Identifier:  ? PAC:19667586
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G46910 0.5kb upstream 0.5kb upstream 4523 true Chr5: 19046358-19050880 Arabidopsis thaliana
AT5G46910 0.5kb upstream 0.5kb upstream 500 false Chr5: 19046358-19046857 Arabidopsis thaliana
AT5G46910 0.5kb downstream 0.5kb downstream 4523 true Chr5: 19046858-19051380 Arabidopsis thaliana
AT5G46910 0.5kb downstream 0.5kb downstream 500 false Chr5: 19050881-19051380 Arabidopsis thaliana
AT5G46910 1.0kb upstream 1.0kb upstream 5023 true Chr5: 19045858-19050880 Arabidopsis thaliana
AT5G46910 1.0kb upstream 1.0kb upstream 1000 false Chr5: 19045858-19046857 Arabidopsis thaliana
AT5G46910 1.0kb downstream 1.0kb downstream 5023 true Chr5: 19046858-19051880 Arabidopsis thaliana
AT5G46910 1.0kb downstream 1.0kb downstream 1000 false Chr5: 19050881-19051880 Arabidopsis thaliana
AT5G46910 2.0kb upstream 2.0kb upstream 6023 true Chr5: 19044858-19050880 Arabidopsis thaliana
AT5G46910 2.0kb upstream 2.0kb upstream 2000 false Chr5: 19044858-19046857 Arabidopsis thaliana
AT5G46910 2.0kb downstream 2.0kb downstream 6023 true Chr5: 19046858-19052880 Arabidopsis thaliana
AT5G46910 2.0kb downstream 2.0kb downstream 2000 false Chr5: 19050881-19052880 Arabidopsis thaliana
AT5G46910 5.0kb upstream 5.0kb upstream 9023 true Chr5: 19041858-19050880 Arabidopsis thaliana
AT5G46910 5.0kb upstream 5.0kb upstream 5000 false Chr5: 19041858-19046857 Arabidopsis thaliana
AT5G46910 5.0kb downstream 5.0kb downstream 9023 true Chr5: 19046858-19055880 Arabidopsis thaliana
AT5G46910 5.0kb downstream 5.0kb downstream 5000 false Chr5: 19050881-19055880 Arabidopsis thaliana
AT5G46910 10.0kb upstream 10.0kb upstream 14023 true Chr5: 19036858-19050880 Arabidopsis thaliana
AT5G46910 10.0kb upstream 10.0kb upstream 10000 false Chr5: 19036858-19046857 Arabidopsis thaliana
AT5G46910 10.0kb downstream 10.0kb downstream 14023 true Chr5: 19046858-19060880 Arabidopsis thaliana
AT5G46910 10.0kb downstream 10.0kb downstream 10000 false Chr5: 19050881-19060880 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122360289 5261 Brassicaceae View MSA
123840912 5264 Brassicales-Malvales View MSA
124338107 5266 SBM View MSA
124239357 5268 Malvidae View MSA
124063293 5270 Rosid View MSA
123753636 5271 Pentapetalae View MSA
122788405 5272 Eudicot View MSA
122042889 5273 Angiosperm View MSA
123428928 5275 Viridiplantae View MSA
121310039 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.211        
cufflinks 10.915        
cufflinks 2.536        
cufflinks 10.892        
cufflinks 2.205       Low
cufflinks 11.012        

0 Strain