Gene : UBP21 A. thaliana TAIR10
Primary Identifier:  ? AT5G46740 Defline:  (1 of 4) PTHR24006:SF524 - UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 21
Genomic Order:  4056 Name:  ? AT5G46740
Secondary Identifier:  ? PAC:19667075
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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G46740 0.5kb upstream 0.5kb upstream 3972 true Chr5: 18965271-18969242 Arabidopsis thaliana
AT5G46740 0.5kb upstream 0.5kb upstream 500 false Chr5: 18968743-18969242 Arabidopsis thaliana
AT5G46740 0.5kb downstream 0.5kb downstream 3972 true Chr5: 18964771-18968742 Arabidopsis thaliana
AT5G46740 0.5kb downstream 0.5kb downstream 500 false Chr5: 18964771-18965270 Arabidopsis thaliana
AT5G46740 1.0kb upstream 1.0kb upstream 4472 true Chr5: 18965271-18969742 Arabidopsis thaliana
AT5G46740 1.0kb upstream 1.0kb upstream 1000 false Chr5: 18968743-18969742 Arabidopsis thaliana
AT5G46740 1.0kb downstream 1.0kb downstream 4472 true Chr5: 18964271-18968742 Arabidopsis thaliana
AT5G46740 1.0kb downstream 1.0kb downstream 1000 false Chr5: 18964271-18965270 Arabidopsis thaliana
AT5G46740 2.0kb upstream 2.0kb upstream 5472 true Chr5: 18965271-18970742 Arabidopsis thaliana
AT5G46740 2.0kb upstream 2.0kb upstream 2000 false Chr5: 18968743-18970742 Arabidopsis thaliana
AT5G46740 2.0kb downstream 2.0kb downstream 5472 true Chr5: 18963271-18968742 Arabidopsis thaliana
AT5G46740 2.0kb downstream 2.0kb downstream 2000 false Chr5: 18963271-18965270 Arabidopsis thaliana
AT5G46740 5.0kb upstream 5.0kb upstream 8472 true Chr5: 18965271-18973742 Arabidopsis thaliana
AT5G46740 5.0kb upstream 5.0kb upstream 5000 false Chr5: 18968743-18973742 Arabidopsis thaliana
AT5G46740 5.0kb downstream 5.0kb downstream 8472 true Chr5: 18960271-18968742 Arabidopsis thaliana
AT5G46740 5.0kb downstream 5.0kb downstream 5000 false Chr5: 18960271-18965270 Arabidopsis thaliana
AT5G46740 10.0kb upstream 10.0kb upstream 13472 true Chr5: 18965271-18978742 Arabidopsis thaliana
AT5G46740 10.0kb upstream 10.0kb upstream 10000 false Chr5: 18968743-18978742 Arabidopsis thaliana
AT5G46740 10.0kb downstream 10.0kb downstream 13472 true Chr5: 18955271-18968742 Arabidopsis thaliana
AT5G46740 10.0kb downstream 10.0kb downstream 10000 false Chr5: 18955271-18965270 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122366673 5261 Brassicaceae View MSA
123841220 5264 Brassicales-Malvales View MSA
124350216 5266 SBM View MSA
124241498 5268 Malvidae View MSA
124064624 5270 Rosid View MSA
123747010 5271 Pentapetalae View MSA
122793778 5272 Eudicot View MSA
122046494 5273 Angiosperm View MSA
121350818 5274 Embryophyte View MSA
123428412 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.567        
cufflinks 4.814        
cufflinks 2.479        
cufflinks 4.856        
cufflinks 1.923       Low
cufflinks 5.706       High

0 Strain