Gene : AT5G46580 A. thaliana TAIR10
Defline:  (1 of 185) PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Genomic Order:  4040
Name:  ? AT5G46580 Secondary Identifier:  ? PAC:19668033
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G46580 0.5kb upstream 0.5kb upstream 2701 true Chr5: 18897445-18900145 Arabidopsis thaliana
AT5G46580 0.5kb upstream 0.5kb upstream 500 false Chr5: 18899646-18900145 Arabidopsis thaliana
AT5G46580 0.5kb downstream 0.5kb downstream 2701 true Chr5: 18896945-18899645 Arabidopsis thaliana
AT5G46580 0.5kb downstream 0.5kb downstream 500 false Chr5: 18896945-18897444 Arabidopsis thaliana
AT5G46580 1.0kb upstream 1.0kb upstream 3201 true Chr5: 18897445-18900645 Arabidopsis thaliana
AT5G46580 1.0kb upstream 1.0kb upstream 1000 false Chr5: 18899646-18900645 Arabidopsis thaliana
AT5G46580 1.0kb downstream 1.0kb downstream 3201 true Chr5: 18896445-18899645 Arabidopsis thaliana
AT5G46580 1.0kb downstream 1.0kb downstream 1000 false Chr5: 18896445-18897444 Arabidopsis thaliana
AT5G46580 2.0kb upstream 2.0kb upstream 4201 true Chr5: 18897445-18901645 Arabidopsis thaliana
AT5G46580 2.0kb upstream 2.0kb upstream 2000 false Chr5: 18899646-18901645 Arabidopsis thaliana
AT5G46580 2.0kb downstream 2.0kb downstream 4201 true Chr5: 18895445-18899645 Arabidopsis thaliana
AT5G46580 2.0kb downstream 2.0kb downstream 2000 false Chr5: 18895445-18897444 Arabidopsis thaliana
AT5G46580 5.0kb upstream 5.0kb upstream 7201 true Chr5: 18897445-18904645 Arabidopsis thaliana
AT5G46580 5.0kb upstream 5.0kb upstream 5000 false Chr5: 18899646-18904645 Arabidopsis thaliana
AT5G46580 5.0kb downstream 5.0kb downstream 7201 true Chr5: 18892445-18899645 Arabidopsis thaliana
AT5G46580 5.0kb downstream 5.0kb downstream 5000 false Chr5: 18892445-18897444 Arabidopsis thaliana
AT5G46580 10.0kb upstream 10.0kb upstream 12201 true Chr5: 18897445-18909645 Arabidopsis thaliana
AT5G46580 10.0kb upstream 10.0kb upstream 10000 false Chr5: 18899646-18909645 Arabidopsis thaliana
AT5G46580 10.0kb downstream 10.0kb downstream 12201 true Chr5: 18887445-18899645 Arabidopsis thaliana
AT5G46580 10.0kb downstream 10.0kb downstream 10000 false Chr5: 18887445-18897444 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122377627 5261 Brassicaceae View MSA
123832249 5264 Brassicales-Malvales View MSA
124343694 5266 SBM View MSA
124241884 5268 Malvidae View MSA
124065827 5270 Rosid View MSA
123753301 5271 Pentapetalae View MSA
122789942 5272 Eudicot View MSA
122043539 5273 Angiosperm View MSA
121344903 5274 Embryophyte View MSA
123380125 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 59.605     High High
cufflinks 3.111        
cufflinks 56.67     High  
cufflinks 3.556        
cufflinks 37.225     High  
cufflinks 3.321        

0 Strain