Gene : AT5G46420 A. thaliana TAIR10
Defline:  (1 of 1) PTHR11952:SF10 - RIMM-LIKE 16S RRNA PROCESSING PROTEIN Genomic Order:  4025
Name:  ? AT5G46420 Secondary Identifier:  ? PAC:19668423
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G46420 0.5kb upstream 0.5kb upstream 3499 true Chr5: 18829455-18832953 Arabidopsis thaliana
AT5G46420 0.5kb upstream 0.5kb upstream 500 false Chr5: 18829455-18829954 Arabidopsis thaliana
AT5G46420 0.5kb downstream 0.5kb downstream 3499 true Chr5: 18829955-18833453 Arabidopsis thaliana
AT5G46420 0.5kb downstream 0.5kb downstream 500 false Chr5: 18832954-18833453 Arabidopsis thaliana
AT5G46420 1.0kb upstream 1.0kb upstream 3999 true Chr5: 18828955-18832953 Arabidopsis thaliana
AT5G46420 1.0kb upstream 1.0kb upstream 1000 false Chr5: 18828955-18829954 Arabidopsis thaliana
AT5G46420 1.0kb downstream 1.0kb downstream 3999 true Chr5: 18829955-18833953 Arabidopsis thaliana
AT5G46420 1.0kb downstream 1.0kb downstream 1000 false Chr5: 18832954-18833953 Arabidopsis thaliana
AT5G46420 2.0kb upstream 2.0kb upstream 4999 true Chr5: 18827955-18832953 Arabidopsis thaliana
AT5G46420 2.0kb upstream 2.0kb upstream 2000 false Chr5: 18827955-18829954 Arabidopsis thaliana
AT5G46420 2.0kb downstream 2.0kb downstream 4999 true Chr5: 18829955-18834953 Arabidopsis thaliana
AT5G46420 2.0kb downstream 2.0kb downstream 2000 false Chr5: 18832954-18834953 Arabidopsis thaliana
AT5G46420 5.0kb upstream 5.0kb upstream 7999 true Chr5: 18824955-18832953 Arabidopsis thaliana
AT5G46420 5.0kb upstream 5.0kb upstream 5000 false Chr5: 18824955-18829954 Arabidopsis thaliana
AT5G46420 5.0kb downstream 5.0kb downstream 7999 true Chr5: 18829955-18837953 Arabidopsis thaliana
AT5G46420 5.0kb downstream 5.0kb downstream 5000 false Chr5: 18832954-18837953 Arabidopsis thaliana
AT5G46420 10.0kb upstream 10.0kb upstream 12999 true Chr5: 18819955-18832953 Arabidopsis thaliana
AT5G46420 10.0kb upstream 10.0kb upstream 10000 false Chr5: 18819955-18829954 Arabidopsis thaliana
AT5G46420 10.0kb downstream 10.0kb downstream 12999 true Chr5: 18829955-18842953 Arabidopsis thaliana
AT5G46420 10.0kb downstream 10.0kb downstream 10000 false Chr5: 18832954-18842953 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122365330 5261 Brassicaceae View MSA
123827674 5264 Brassicales-Malvales View MSA
124343878 5266 SBM View MSA
124240882 5268 Malvidae View MSA
124064396 5270 Rosid View MSA
123739225 5271 Pentapetalae View MSA
122792517 5272 Eudicot View MSA
122043949 5273 Angiosperm View MSA
121344082 5274 Embryophyte View MSA
123379972 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 46.635     High High
cufflinks 7.562        
cufflinks 43.002     High  
cufflinks 7.401        
cufflinks 36.249     High  
cufflinks 6.36       Low

0 Strain