Gene : AT5G48830 A. thaliana TAIR10
Defline:  (1 of 1) PF12452 - Protein of unknown function (DUF3685) (DUF3685) Genomic Order:  4290
Name:  ? AT5G48830 Secondary Identifier:  ? PAC:19669670
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G48830 0.5kb upstream 0.5kb upstream 3485 true Chr5: 19800114-19803598 Arabidopsis thaliana
AT5G48830 0.5kb upstream 0.5kb upstream 500 false Chr5: 19803099-19803598 Arabidopsis thaliana
AT5G48830 0.5kb downstream 0.5kb downstream 3485 true Chr5: 19799614-19803098 Arabidopsis thaliana
AT5G48830 0.5kb downstream 0.5kb downstream 500 false Chr5: 19799614-19800113 Arabidopsis thaliana
AT5G48830 1.0kb upstream 1.0kb upstream 3985 true Chr5: 19800114-19804098 Arabidopsis thaliana
AT5G48830 1.0kb upstream 1.0kb upstream 1000 false Chr5: 19803099-19804098 Arabidopsis thaliana
AT5G48830 1.0kb downstream 1.0kb downstream 3985 true Chr5: 19799114-19803098 Arabidopsis thaliana
AT5G48830 1.0kb downstream 1.0kb downstream 1000 false Chr5: 19799114-19800113 Arabidopsis thaliana
AT5G48830 2.0kb upstream 2.0kb upstream 4985 true Chr5: 19800114-19805098 Arabidopsis thaliana
AT5G48830 2.0kb upstream 2.0kb upstream 2000 false Chr5: 19803099-19805098 Arabidopsis thaliana
AT5G48830 2.0kb downstream 2.0kb downstream 4985 true Chr5: 19798114-19803098 Arabidopsis thaliana
AT5G48830 2.0kb downstream 2.0kb downstream 2000 false Chr5: 19798114-19800113 Arabidopsis thaliana
AT5G48830 5.0kb upstream 5.0kb upstream 7985 true Chr5: 19800114-19808098 Arabidopsis thaliana
AT5G48830 5.0kb upstream 5.0kb upstream 5000 false Chr5: 19803099-19808098 Arabidopsis thaliana
AT5G48830 5.0kb downstream 5.0kb downstream 7985 true Chr5: 19795114-19803098 Arabidopsis thaliana
AT5G48830 5.0kb downstream 5.0kb downstream 5000 false Chr5: 19795114-19800113 Arabidopsis thaliana
AT5G48830 10.0kb upstream 10.0kb upstream 12985 true Chr5: 19800114-19813098 Arabidopsis thaliana
AT5G48830 10.0kb upstream 10.0kb upstream 10000 false Chr5: 19803099-19813098 Arabidopsis thaliana
AT5G48830 10.0kb downstream 10.0kb downstream 12985 true Chr5: 19790114-19803098 Arabidopsis thaliana
AT5G48830 10.0kb downstream 10.0kb downstream 10000 false Chr5: 19790114-19800113 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122362158 5261 Brassicaceae View MSA
123837592 5264 Brassicales-Malvales View MSA
124337220 5266 SBM View MSA
124242986 5268 Malvidae View MSA
124065521 5270 Rosid View MSA
123739114 5271 Pentapetalae View MSA
122786546 5272 Eudicot View MSA
122046788 5273 Angiosperm View MSA
121346077 5274 Embryophyte View MSA
123380322 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.263       High
cufflinks 2.54        
cufflinks 5.415       High
cufflinks 2.227       Low
cufflinks 3.91        
cufflinks 2.728        

0 Strain