Gene : XRI1 A. thaliana TAIR10
Primary Identifier:  ? AT5G48720 Defline:  (1 of 1) PTHR33385//PTHR33385:SF4 - FAMILY NOT NAMED // PROTEIN XRI1
Genomic Order:  4279 Name:  ? AT5G48720
Secondary Identifier:  ? PAC:19670734
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0 Pathways

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G48720 0.5kb upstream 0.5kb upstream 3341 true Chr5: 19758381-19761721 Arabidopsis thaliana
AT5G48720 0.5kb upstream 0.5kb upstream 500 false Chr5: 19758381-19758880 Arabidopsis thaliana
AT5G48720 0.5kb downstream 0.5kb downstream 3341 true Chr5: 19758881-19762221 Arabidopsis thaliana
AT5G48720 0.5kb downstream 0.5kb downstream 500 false Chr5: 19761722-19762221 Arabidopsis thaliana
AT5G48720 1.0kb upstream 1.0kb upstream 3841 true Chr5: 19757881-19761721 Arabidopsis thaliana
AT5G48720 1.0kb upstream 1.0kb upstream 1000 false Chr5: 19757881-19758880 Arabidopsis thaliana
AT5G48720 1.0kb downstream 1.0kb downstream 3841 true Chr5: 19758881-19762721 Arabidopsis thaliana
AT5G48720 1.0kb downstream 1.0kb downstream 1000 false Chr5: 19761722-19762721 Arabidopsis thaliana
AT5G48720 2.0kb upstream 2.0kb upstream 4841 true Chr5: 19756881-19761721 Arabidopsis thaliana
AT5G48720 2.0kb upstream 2.0kb upstream 2000 false Chr5: 19756881-19758880 Arabidopsis thaliana
AT5G48720 2.0kb downstream 2.0kb downstream 4841 true Chr5: 19758881-19763721 Arabidopsis thaliana
AT5G48720 2.0kb downstream 2.0kb downstream 2000 false Chr5: 19761722-19763721 Arabidopsis thaliana
AT5G48720 5.0kb upstream 5.0kb upstream 7841 true Chr5: 19753881-19761721 Arabidopsis thaliana
AT5G48720 5.0kb upstream 5.0kb upstream 5000 false Chr5: 19753881-19758880 Arabidopsis thaliana
AT5G48720 5.0kb downstream 5.0kb downstream 7841 true Chr5: 19758881-19766721 Arabidopsis thaliana
AT5G48720 5.0kb downstream 5.0kb downstream 5000 false Chr5: 19761722-19766721 Arabidopsis thaliana
AT5G48720 10.0kb upstream 10.0kb upstream 12841 true Chr5: 19748881-19761721 Arabidopsis thaliana
AT5G48720 10.0kb upstream 10.0kb upstream 10000 false Chr5: 19748881-19758880 Arabidopsis thaliana
AT5G48720 10.0kb downstream 10.0kb downstream 12841 true Chr5: 19758881-19771721 Arabidopsis thaliana
AT5G48720 10.0kb downstream 10.0kb downstream 10000 false Chr5: 19761722-19771721 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122373726 5261 Brassicaceae View MSA
123840532 5264 Brassicales-Malvales View MSA
124350194 5266 SBM View MSA
124243152 5268 Malvidae View MSA
124050425 5270 Rosid View MSA
123749670 5271 Pentapetalae View MSA
122786653 5272 Eudicot View MSA
122050817 5273 Angiosperm View MSA
121348278 5274 Embryophyte View MSA
123380804 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.847        
cufflinks 2.705        
cufflinks 1.231       Low
cufflinks 2.862        
cufflinks 1.118       Low
cufflinks 2.933        

0 Strain