Gene : AT5G48250 A. thaliana TAIR10
Defline:  (1 of 2) PTHR31717//PTHR31717:SF8 - FAMILY NOT NAMED // ZINC FINGER PROTEIN CONSTANS-LIKE 10-RELATED Genomic Order:  4221
Name:  ? AT5G48250 Secondary Identifier:  ? PAC:19670900
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G48250 0.5kb upstream 0.5kb upstream 2904 true Chr5: 19561319-19564222 Arabidopsis thaliana
AT5G48250 0.5kb upstream 0.5kb upstream 500 false Chr5: 19563723-19564222 Arabidopsis thaliana
AT5G48250 0.5kb downstream 0.5kb downstream 2904 true Chr5: 19560819-19563722 Arabidopsis thaliana
AT5G48250 0.5kb downstream 0.5kb downstream 500 false Chr5: 19560819-19561318 Arabidopsis thaliana
AT5G48250 1.0kb upstream 1.0kb upstream 3404 true Chr5: 19561319-19564722 Arabidopsis thaliana
AT5G48250 1.0kb upstream 1.0kb upstream 1000 false Chr5: 19563723-19564722 Arabidopsis thaliana
AT5G48250 1.0kb downstream 1.0kb downstream 3404 true Chr5: 19560319-19563722 Arabidopsis thaliana
AT5G48250 1.0kb downstream 1.0kb downstream 1000 false Chr5: 19560319-19561318 Arabidopsis thaliana
AT5G48250 2.0kb upstream 2.0kb upstream 4404 true Chr5: 19561319-19565722 Arabidopsis thaliana
AT5G48250 2.0kb upstream 2.0kb upstream 2000 false Chr5: 19563723-19565722 Arabidopsis thaliana
AT5G48250 2.0kb downstream 2.0kb downstream 4404 true Chr5: 19559319-19563722 Arabidopsis thaliana
AT5G48250 2.0kb downstream 2.0kb downstream 2000 false Chr5: 19559319-19561318 Arabidopsis thaliana
AT5G48250 5.0kb upstream 5.0kb upstream 7404 true Chr5: 19561319-19568722 Arabidopsis thaliana
AT5G48250 5.0kb upstream 5.0kb upstream 5000 false Chr5: 19563723-19568722 Arabidopsis thaliana
AT5G48250 5.0kb downstream 5.0kb downstream 7404 true Chr5: 19556319-19563722 Arabidopsis thaliana
AT5G48250 5.0kb downstream 5.0kb downstream 5000 false Chr5: 19556319-19561318 Arabidopsis thaliana
AT5G48250 10.0kb upstream 10.0kb upstream 12404 true Chr5: 19561319-19573722 Arabidopsis thaliana
AT5G48250 10.0kb upstream 10.0kb upstream 10000 false Chr5: 19563723-19573722 Arabidopsis thaliana
AT5G48250 10.0kb downstream 10.0kb downstream 12404 true Chr5: 19551319-19563722 Arabidopsis thaliana
AT5G48250 10.0kb downstream 10.0kb downstream 10000 false Chr5: 19551319-19561318 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122364876 5261 Brassicaceae View MSA
123839244 5264 Brassicales-Malvales View MSA
124351347 5266 SBM View MSA
124243820 5268 Malvidae View MSA
124060563 5270 Rosid View MSA
123751246 5271 Pentapetalae View MSA
122785793 5272 Eudicot View MSA
122049477 5273 Angiosperm View MSA
123428935 5275 Viridiplantae View MSA
121350351 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 21.355       High
cufflinks 11.398        
cufflinks 20.625       High
cufflinks 10.296       Low
cufflinks 14.588        
cufflinks 11.24        

0 Strain