Gene : AT5G47900 A. thaliana TAIR10
Defline:  (1 of 2) 2.3.1.78 - Heparan-alpha-glucosaminide N-acetyltransferase Genomic Order:  4184
Name:  ? AT5G47900 Secondary Identifier:  ? PAC:19667166
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G47900 0.5kb upstream 0.5kb upstream 3402 true Chr5: 19391734-19395135 Arabidopsis thaliana
AT5G47900 0.5kb upstream 0.5kb upstream 500 false Chr5: 19391734-19392233 Arabidopsis thaliana
AT5G47900 0.5kb downstream 0.5kb downstream 3402 true Chr5: 19392234-19395635 Arabidopsis thaliana
AT5G47900 0.5kb downstream 0.5kb downstream 500 false Chr5: 19395136-19395635 Arabidopsis thaliana
AT5G47900 1.0kb upstream 1.0kb upstream 3902 true Chr5: 19391234-19395135 Arabidopsis thaliana
AT5G47900 1.0kb upstream 1.0kb upstream 1000 false Chr5: 19391234-19392233 Arabidopsis thaliana
AT5G47900 1.0kb downstream 1.0kb downstream 3902 true Chr5: 19392234-19396135 Arabidopsis thaliana
AT5G47900 1.0kb downstream 1.0kb downstream 1000 false Chr5: 19395136-19396135 Arabidopsis thaliana
AT5G47900 2.0kb upstream 2.0kb upstream 4902 true Chr5: 19390234-19395135 Arabidopsis thaliana
AT5G47900 2.0kb upstream 2.0kb upstream 2000 false Chr5: 19390234-19392233 Arabidopsis thaliana
AT5G47900 2.0kb downstream 2.0kb downstream 4902 true Chr5: 19392234-19397135 Arabidopsis thaliana
AT5G47900 2.0kb downstream 2.0kb downstream 2000 false Chr5: 19395136-19397135 Arabidopsis thaliana
AT5G47900 5.0kb upstream 5.0kb upstream 7902 true Chr5: 19387234-19395135 Arabidopsis thaliana
AT5G47900 5.0kb upstream 5.0kb upstream 5000 false Chr5: 19387234-19392233 Arabidopsis thaliana
AT5G47900 5.0kb downstream 5.0kb downstream 7902 true Chr5: 19392234-19400135 Arabidopsis thaliana
AT5G47900 5.0kb downstream 5.0kb downstream 5000 false Chr5: 19395136-19400135 Arabidopsis thaliana
AT5G47900 10.0kb upstream 10.0kb upstream 12902 true Chr5: 19382234-19395135 Arabidopsis thaliana
AT5G47900 10.0kb upstream 10.0kb upstream 10000 false Chr5: 19382234-19392233 Arabidopsis thaliana
AT5G47900 10.0kb downstream 10.0kb downstream 12902 true Chr5: 19392234-19405135 Arabidopsis thaliana
AT5G47900 10.0kb downstream 10.0kb downstream 10000 false Chr5: 19395136-19405135 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122362428 5261 Brassicaceae View MSA
123834230 5264 Brassicales-Malvales View MSA
124336950 5266 SBM View MSA
124248357 5268 Malvidae View MSA
124071338 5270 Rosid View MSA
123742332 5271 Pentapetalae View MSA
122794345 5272 Eudicot View MSA
122048388 5273 Angiosperm View MSA
121350425 5274 Embryophyte View MSA
123424378 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.601        
cufflinks 0.019     Low  
cufflinks 0.51        
cufflinks 0.015     Low  
cufflinks 0.453        
cufflinks 0.012     Low Low

0 Strain