Gene : HVA22E A. thaliana TAIR10
Primary Identifier:  ? AT5G50720 Defline:  (1 of 1) PTHR12300//PTHR12300:SF58 - HVA22-LIKE PROTEINS // SUBFAMILY NOT NAMED
Genomic Order:  4499 Name:  ? AT5G50720
Secondary Identifier:  ? PAC:19665613
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G50720 0.5kb upstream 0.5kb upstream 1860 true Chr5: 20633193-20635052 Arabidopsis thaliana
AT5G50720 0.5kb upstream 0.5kb upstream 500 false Chr5: 20634553-20635052 Arabidopsis thaliana
AT5G50720 0.5kb downstream 0.5kb downstream 1860 true Chr5: 20632693-20634552 Arabidopsis thaliana
AT5G50720 0.5kb downstream 0.5kb downstream 500 false Chr5: 20632693-20633192 Arabidopsis thaliana
AT5G50720 1.0kb upstream 1.0kb upstream 2360 true Chr5: 20633193-20635552 Arabidopsis thaliana
AT5G50720 1.0kb upstream 1.0kb upstream 1000 false Chr5: 20634553-20635552 Arabidopsis thaliana
AT5G50720 1.0kb downstream 1.0kb downstream 2360 true Chr5: 20632193-20634552 Arabidopsis thaliana
AT5G50720 1.0kb downstream 1.0kb downstream 1000 false Chr5: 20632193-20633192 Arabidopsis thaliana
AT5G50720 2.0kb upstream 2.0kb upstream 3360 true Chr5: 20633193-20636552 Arabidopsis thaliana
AT5G50720 2.0kb upstream 2.0kb upstream 2000 false Chr5: 20634553-20636552 Arabidopsis thaliana
AT5G50720 2.0kb downstream 2.0kb downstream 3360 true Chr5: 20631193-20634552 Arabidopsis thaliana
AT5G50720 2.0kb downstream 2.0kb downstream 2000 false Chr5: 20631193-20633192 Arabidopsis thaliana
AT5G50720 5.0kb upstream 5.0kb upstream 6360 true Chr5: 20633193-20639552 Arabidopsis thaliana
AT5G50720 5.0kb upstream 5.0kb upstream 5000 false Chr5: 20634553-20639552 Arabidopsis thaliana
AT5G50720 5.0kb downstream 5.0kb downstream 6360 true Chr5: 20628193-20634552 Arabidopsis thaliana
AT5G50720 5.0kb downstream 5.0kb downstream 5000 false Chr5: 20628193-20633192 Arabidopsis thaliana
AT5G50720 10.0kb upstream 10.0kb upstream 11360 true Chr5: 20633193-20644552 Arabidopsis thaliana
AT5G50720 10.0kb upstream 10.0kb upstream 10000 false Chr5: 20634553-20644552 Arabidopsis thaliana
AT5G50720 10.0kb downstream 10.0kb downstream 11360 true Chr5: 20623193-20634552 Arabidopsis thaliana
AT5G50720 10.0kb downstream 10.0kb downstream 10000 false Chr5: 20623193-20633192 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122374748 5261 Brassicaceae View MSA
123830573 5264 Brassicales-Malvales View MSA
124341448 5266 SBM View MSA
124248122 5268 Malvidae View MSA
124062938 5270 Rosid View MSA
123747497 5271 Pentapetalae View MSA
122794612 5272 Eudicot View MSA
122049450 5273 Angiosperm View MSA
121349779 5274 Embryophyte View MSA
123427624 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.989       Low
cufflinks 42.902     High High
cufflinks 5.294        
cufflinks 28.772        
cufflinks 4.587        
cufflinks 26.979        

0 Strain