Gene : RUS6 A. thaliana TAIR10
Primary Identifier:  ? AT5G49820 Defline:  (1 of 6) PF04884 - Vitamin B6 photo-protection and homoeostasis (DUF647)
Genomic Order:  4395 Name:  ? AT5G49820
Secondary Identifier:  ? PAC:19669180
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G49820 0.5kb upstream 0.5kb upstream 3546 true Chr5: 20246500-20250045 Arabidopsis thaliana
AT5G49820 0.5kb upstream 0.5kb upstream 500 false Chr5: 20249546-20250045 Arabidopsis thaliana
AT5G49820 0.5kb downstream 0.5kb downstream 3546 true Chr5: 20246000-20249545 Arabidopsis thaliana
AT5G49820 0.5kb downstream 0.5kb downstream 500 false Chr5: 20246000-20246499 Arabidopsis thaliana
AT5G49820 1.0kb upstream 1.0kb upstream 4046 true Chr5: 20246500-20250545 Arabidopsis thaliana
AT5G49820 1.0kb upstream 1.0kb upstream 1000 false Chr5: 20249546-20250545 Arabidopsis thaliana
AT5G49820 1.0kb downstream 1.0kb downstream 4046 true Chr5: 20245500-20249545 Arabidopsis thaliana
AT5G49820 1.0kb downstream 1.0kb downstream 1000 false Chr5: 20245500-20246499 Arabidopsis thaliana
AT5G49820 2.0kb upstream 2.0kb upstream 5046 true Chr5: 20246500-20251545 Arabidopsis thaliana
AT5G49820 2.0kb upstream 2.0kb upstream 2000 false Chr5: 20249546-20251545 Arabidopsis thaliana
AT5G49820 2.0kb downstream 2.0kb downstream 5046 true Chr5: 20244500-20249545 Arabidopsis thaliana
AT5G49820 2.0kb downstream 2.0kb downstream 2000 false Chr5: 20244500-20246499 Arabidopsis thaliana
AT5G49820 5.0kb upstream 5.0kb upstream 8046 true Chr5: 20246500-20254545 Arabidopsis thaliana
AT5G49820 5.0kb upstream 5.0kb upstream 5000 false Chr5: 20249546-20254545 Arabidopsis thaliana
AT5G49820 5.0kb downstream 5.0kb downstream 8046 true Chr5: 20241500-20249545 Arabidopsis thaliana
AT5G49820 5.0kb downstream 5.0kb downstream 5000 false Chr5: 20241500-20246499 Arabidopsis thaliana
AT5G49820 10.0kb upstream 10.0kb upstream 13046 true Chr5: 20246500-20259545 Arabidopsis thaliana
AT5G49820 10.0kb upstream 10.0kb upstream 10000 false Chr5: 20249546-20259545 Arabidopsis thaliana
AT5G49820 10.0kb downstream 10.0kb downstream 13046 true Chr5: 20236500-20249545 Arabidopsis thaliana
AT5G49820 10.0kb downstream 10.0kb downstream 10000 false Chr5: 20236500-20246499 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122366876 5261 Brassicaceae View MSA
123834035 5264 Brassicales-Malvales View MSA
124343987 5266 SBM View MSA
124239806 5268 Malvidae View MSA
124064766 5270 Rosid View MSA
123744399 5271 Pentapetalae View MSA
122790048 5272 Eudicot View MSA
122042067 5273 Angiosperm View MSA
121346127 5274 Embryophyte View MSA
123428813 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 10.247       Low
cufflinks 12.52        
cufflinks 13.517        
cufflinks 13.431        
cufflinks 10.994        
cufflinks 15.326       High

0 Strain