Gene : AT5G49680 A. thaliana TAIR10
Defline:  (1 of 2) PTHR15678 - ANTIGEN MLAA-22-RELATED Genomic Order:  4382
Name:  ? AT5G49680 Secondary Identifier:  ? PAC:19671205
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G49680 0.5kb upstream 0.5kb upstream 12423 true Chr5: 20175885-20188307 Arabidopsis thaliana
AT5G49680 0.5kb upstream 0.5kb upstream 500 false Chr5: 20175885-20176384 Arabidopsis thaliana
AT5G49680 0.5kb downstream 0.5kb downstream 12423 true Chr5: 20176385-20188807 Arabidopsis thaliana
AT5G49680 0.5kb downstream 0.5kb downstream 500 false Chr5: 20188308-20188807 Arabidopsis thaliana
AT5G49680 1.0kb upstream 1.0kb upstream 12923 true Chr5: 20175385-20188307 Arabidopsis thaliana
AT5G49680 1.0kb upstream 1.0kb upstream 1000 false Chr5: 20175385-20176384 Arabidopsis thaliana
AT5G49680 1.0kb downstream 1.0kb downstream 12923 true Chr5: 20176385-20189307 Arabidopsis thaliana
AT5G49680 1.0kb downstream 1.0kb downstream 1000 false Chr5: 20188308-20189307 Arabidopsis thaliana
AT5G49680 2.0kb upstream 2.0kb upstream 13923 true Chr5: 20174385-20188307 Arabidopsis thaliana
AT5G49680 2.0kb upstream 2.0kb upstream 2000 false Chr5: 20174385-20176384 Arabidopsis thaliana
AT5G49680 2.0kb downstream 2.0kb downstream 13923 true Chr5: 20176385-20190307 Arabidopsis thaliana
AT5G49680 2.0kb downstream 2.0kb downstream 2000 false Chr5: 20188308-20190307 Arabidopsis thaliana
AT5G49680 5.0kb upstream 5.0kb upstream 16923 true Chr5: 20171385-20188307 Arabidopsis thaliana
AT5G49680 5.0kb upstream 5.0kb upstream 5000 false Chr5: 20171385-20176384 Arabidopsis thaliana
AT5G49680 5.0kb downstream 5.0kb downstream 16923 true Chr5: 20176385-20193307 Arabidopsis thaliana
AT5G49680 5.0kb downstream 5.0kb downstream 5000 false Chr5: 20188308-20193307 Arabidopsis thaliana
AT5G49680 10.0kb upstream 10.0kb upstream 21923 true Chr5: 20166385-20188307 Arabidopsis thaliana
AT5G49680 10.0kb upstream 10.0kb upstream 10000 false Chr5: 20166385-20176384 Arabidopsis thaliana
AT5G49680 10.0kb downstream 10.0kb downstream 21923 true Chr5: 20176385-20198307 Arabidopsis thaliana
AT5G49680 10.0kb downstream 10.0kb downstream 10000 false Chr5: 20188308-20198307 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122364482 5261 Brassicaceae View MSA
123839633 5264 Brassicales-Malvales View MSA
124342514 5266 SBM View MSA
124237607 5268 Malvidae View MSA
124067237 5270 Rosid View MSA
123743501 5271 Pentapetalae View MSA
122787357 5272 Eudicot View MSA
122044686 5273 Angiosperm View MSA
121349387 5274 Embryophyte View MSA
123381291 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.386       High
cufflinks 0.797        
cufflinks 0.721       Low
cufflinks 1.475        
cufflinks 1.196        
cufflinks 1.334        

0 Strain