Gene : AT5G52330 A. thaliana TAIR10
Defline:  (1 of 64) PF00917 - MATH domain (MATH) Genomic Order:  4665
Name:  ? AT5G52330 Secondary Identifier:  ? PAC:19670604
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G52330 0.5kb upstream 0.5kb upstream 3330 true Chr5: 21247596-21250925 Arabidopsis thaliana
AT5G52330 0.5kb upstream 0.5kb upstream 500 false Chr5: 21250426-21250925 Arabidopsis thaliana
AT5G52330 0.5kb downstream 0.5kb downstream 3330 true Chr5: 21247096-21250425 Arabidopsis thaliana
AT5G52330 0.5kb downstream 0.5kb downstream 500 false Chr5: 21247096-21247595 Arabidopsis thaliana
AT5G52330 1.0kb upstream 1.0kb upstream 3830 true Chr5: 21247596-21251425 Arabidopsis thaliana
AT5G52330 1.0kb upstream 1.0kb upstream 1000 false Chr5: 21250426-21251425 Arabidopsis thaliana
AT5G52330 1.0kb downstream 1.0kb downstream 3830 true Chr5: 21246596-21250425 Arabidopsis thaliana
AT5G52330 1.0kb downstream 1.0kb downstream 1000 false Chr5: 21246596-21247595 Arabidopsis thaliana
AT5G52330 2.0kb upstream 2.0kb upstream 4830 true Chr5: 21247596-21252425 Arabidopsis thaliana
AT5G52330 2.0kb upstream 2.0kb upstream 2000 false Chr5: 21250426-21252425 Arabidopsis thaliana
AT5G52330 2.0kb downstream 2.0kb downstream 4830 true Chr5: 21245596-21250425 Arabidopsis thaliana
AT5G52330 2.0kb downstream 2.0kb downstream 2000 false Chr5: 21245596-21247595 Arabidopsis thaliana
AT5G52330 5.0kb upstream 5.0kb upstream 7830 true Chr5: 21247596-21255425 Arabidopsis thaliana
AT5G52330 5.0kb upstream 5.0kb upstream 5000 false Chr5: 21250426-21255425 Arabidopsis thaliana
AT5G52330 5.0kb downstream 5.0kb downstream 7830 true Chr5: 21242596-21250425 Arabidopsis thaliana
AT5G52330 5.0kb downstream 5.0kb downstream 5000 false Chr5: 21242596-21247595 Arabidopsis thaliana
AT5G52330 10.0kb upstream 10.0kb upstream 12830 true Chr5: 21247596-21260425 Arabidopsis thaliana
AT5G52330 10.0kb upstream 10.0kb upstream 10000 false Chr5: 21250426-21260425 Arabidopsis thaliana
AT5G52330 10.0kb downstream 10.0kb downstream 12830 true Chr5: 21237596-21250425 Arabidopsis thaliana
AT5G52330 10.0kb downstream 10.0kb downstream 10000 false Chr5: 21237596-21247595 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026595 5273 Angiosperm View MSA
122370157 5261 Brassicaceae View MSA
123799910 5264 Brassicales-Malvales View MSA
124297381 5266 SBM View MSA
124149290 5268 Malvidae View MSA
124037293 5270 Rosid View MSA
123741826 5271 Pentapetalae View MSA
122792639 5272 Eudicot View MSA
123429159 5275 Viridiplantae View MSA
121296410 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.019     Low Low
cufflinks 1.164        
cufflinks 0.016     Low Low
cufflinks 1.417        
cufflinks 0.049     Low  
cufflinks 1.414        

0 Strain