Gene : AT5G53490 A. thaliana TAIR10
Defline:  (1 of 1) PTHR14136:SF11 - THYLAKOID LUMENAL 17.4 KDA PROTEIN, CHLOROPLASTIC Genomic Order:  4793
Name:  ? AT5G53490 Secondary Identifier:  ? PAC:19671855
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G53490 0.5kb upstream 0.5kb upstream 1836 true Chr5: 21723307-21725142 Arabidopsis thaliana
AT5G53490 0.5kb upstream 0.5kb upstream 500 false Chr5: 21724643-21725142 Arabidopsis thaliana
AT5G53490 0.5kb downstream 0.5kb downstream 1836 true Chr5: 21722807-21724642 Arabidopsis thaliana
AT5G53490 0.5kb downstream 0.5kb downstream 500 false Chr5: 21722807-21723306 Arabidopsis thaliana
AT5G53490 1.0kb upstream 1.0kb upstream 2336 true Chr5: 21723307-21725642 Arabidopsis thaliana
AT5G53490 1.0kb upstream 1.0kb upstream 1000 false Chr5: 21724643-21725642 Arabidopsis thaliana
AT5G53490 1.0kb downstream 1.0kb downstream 2336 true Chr5: 21722307-21724642 Arabidopsis thaliana
AT5G53490 1.0kb downstream 1.0kb downstream 1000 false Chr5: 21722307-21723306 Arabidopsis thaliana
AT5G53490 2.0kb upstream 2.0kb upstream 3336 true Chr5: 21723307-21726642 Arabidopsis thaliana
AT5G53490 2.0kb upstream 2.0kb upstream 2000 false Chr5: 21724643-21726642 Arabidopsis thaliana
AT5G53490 2.0kb downstream 2.0kb downstream 3336 true Chr5: 21721307-21724642 Arabidopsis thaliana
AT5G53490 2.0kb downstream 2.0kb downstream 2000 false Chr5: 21721307-21723306 Arabidopsis thaliana
AT5G53490 5.0kb upstream 5.0kb upstream 6336 true Chr5: 21723307-21729642 Arabidopsis thaliana
AT5G53490 5.0kb upstream 5.0kb upstream 5000 false Chr5: 21724643-21729642 Arabidopsis thaliana
AT5G53490 5.0kb downstream 5.0kb downstream 6336 true Chr5: 21718307-21724642 Arabidopsis thaliana
AT5G53490 5.0kb downstream 5.0kb downstream 5000 false Chr5: 21718307-21723306 Arabidopsis thaliana
AT5G53490 10.0kb upstream 10.0kb upstream 11336 true Chr5: 21723307-21734642 Arabidopsis thaliana
AT5G53490 10.0kb upstream 10.0kb upstream 10000 false Chr5: 21724643-21734642 Arabidopsis thaliana
AT5G53490 10.0kb downstream 10.0kb downstream 11336 true Chr5: 21713307-21724642 Arabidopsis thaliana
AT5G53490 10.0kb downstream 10.0kb downstream 10000 false Chr5: 21713307-21723306 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122378923 5261 Brassicaceae View MSA
123837036 5264 Brassicales-Malvales View MSA
124346992 5266 SBM View MSA
124245429 5268 Malvidae View MSA
124066927 5270 Rosid View MSA
123751077 5271 Pentapetalae View MSA
122794954 5272 Eudicot View MSA
122044610 5273 Angiosperm View MSA
121348286 5274 Embryophyte View MSA
123426937 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 41.458     High  
cufflinks 1.082        
cufflinks 49.807     High  
cufflinks 0.983        
cufflinks 32.412     High  
cufflinks 0.431       Low

0 Strain