Gene : PTB2 A. thaliana TAIR10
Primary Identifier:  ? AT5G53180 Defline:  (1 of 3) K14948 - polypyrimidine tract-binding protein 2 (PTBP2, NPTB)
Genomic Order:  4759 Name:  ? AT5G53180
Secondary Identifier:  ? PAC:19670826
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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G53180 0.5kb upstream 0.5kb upstream 4203 true Chr5: 21568200-21572402 Arabidopsis thaliana
AT5G53180 0.5kb upstream 0.5kb upstream 500 false Chr5: 21571903-21572402 Arabidopsis thaliana
AT5G53180 0.5kb downstream 0.5kb downstream 4203 true Chr5: 21567700-21571902 Arabidopsis thaliana
AT5G53180 0.5kb downstream 0.5kb downstream 500 false Chr5: 21567700-21568199 Arabidopsis thaliana
AT5G53180 1.0kb upstream 1.0kb upstream 4703 true Chr5: 21568200-21572902 Arabidopsis thaliana
AT5G53180 1.0kb upstream 1.0kb upstream 1000 false Chr5: 21571903-21572902 Arabidopsis thaliana
AT5G53180 1.0kb downstream 1.0kb downstream 4703 true Chr5: 21567200-21571902 Arabidopsis thaliana
AT5G53180 1.0kb downstream 1.0kb downstream 1000 false Chr5: 21567200-21568199 Arabidopsis thaliana
AT5G53180 2.0kb upstream 2.0kb upstream 5703 true Chr5: 21568200-21573902 Arabidopsis thaliana
AT5G53180 2.0kb upstream 2.0kb upstream 2000 false Chr5: 21571903-21573902 Arabidopsis thaliana
AT5G53180 2.0kb downstream 2.0kb downstream 5703 true Chr5: 21566200-21571902 Arabidopsis thaliana
AT5G53180 2.0kb downstream 2.0kb downstream 2000 false Chr5: 21566200-21568199 Arabidopsis thaliana
AT5G53180 5.0kb upstream 5.0kb upstream 8703 true Chr5: 21568200-21576902 Arabidopsis thaliana
AT5G53180 5.0kb upstream 5.0kb upstream 5000 false Chr5: 21571903-21576902 Arabidopsis thaliana
AT5G53180 5.0kb downstream 5.0kb downstream 8703 true Chr5: 21563200-21571902 Arabidopsis thaliana
AT5G53180 5.0kb downstream 5.0kb downstream 5000 false Chr5: 21563200-21568199 Arabidopsis thaliana
AT5G53180 10.0kb upstream 10.0kb upstream 13703 true Chr5: 21568200-21581902 Arabidopsis thaliana
AT5G53180 10.0kb upstream 10.0kb upstream 10000 false Chr5: 21571903-21581902 Arabidopsis thaliana
AT5G53180 10.0kb downstream 10.0kb downstream 13703 true Chr5: 21558200-21571902 Arabidopsis thaliana
AT5G53180 10.0kb downstream 10.0kb downstream 10000 false Chr5: 21558200-21568199 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122371481 5261 Brassicaceae View MSA
123829998 5264 Brassicales-Malvales View MSA
124321645 5266 SBM View MSA
124244439 5268 Malvidae View MSA
124060480 5270 Rosid View MSA
123737702 5271 Pentapetalae View MSA
122796328 5272 Eudicot View MSA
122049388 5273 Angiosperm View MSA
121345095 5274 Embryophyte View MSA
123424707 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.077        
cufflinks 4.199        
cufflinks 3.841        
cufflinks 4.556       High
cufflinks 3.733       Low
cufflinks 4.174        

0 Strain