Gene : AT5G52980 A. thaliana TAIR10
Defline:  (1 of 1) PTHR31394:SF1 - TRANSMEMBRANE PROTEIN 199 Genomic Order:  4737
Name:  ? AT5G52980 Secondary Identifier:  ? PAC:19669136
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G52980 0.5kb upstream 0.5kb upstream 2063 true Chr5: 21482160-21484222 Arabidopsis thaliana
AT5G52980 0.5kb upstream 0.5kb upstream 500 false Chr5: 21483723-21484222 Arabidopsis thaliana
AT5G52980 0.5kb downstream 0.5kb downstream 2063 true Chr5: 21481660-21483722 Arabidopsis thaliana
AT5G52980 0.5kb downstream 0.5kb downstream 500 false Chr5: 21481660-21482159 Arabidopsis thaliana
AT5G52980 1.0kb upstream 1.0kb upstream 2563 true Chr5: 21482160-21484722 Arabidopsis thaliana
AT5G52980 1.0kb upstream 1.0kb upstream 1000 false Chr5: 21483723-21484722 Arabidopsis thaliana
AT5G52980 1.0kb downstream 1.0kb downstream 2563 true Chr5: 21481160-21483722 Arabidopsis thaliana
AT5G52980 1.0kb downstream 1.0kb downstream 1000 false Chr5: 21481160-21482159 Arabidopsis thaliana
AT5G52980 2.0kb upstream 2.0kb upstream 3563 true Chr5: 21482160-21485722 Arabidopsis thaliana
AT5G52980 2.0kb upstream 2.0kb upstream 2000 false Chr5: 21483723-21485722 Arabidopsis thaliana
AT5G52980 2.0kb downstream 2.0kb downstream 3563 true Chr5: 21480160-21483722 Arabidopsis thaliana
AT5G52980 2.0kb downstream 2.0kb downstream 2000 false Chr5: 21480160-21482159 Arabidopsis thaliana
AT5G52980 5.0kb upstream 5.0kb upstream 6563 true Chr5: 21482160-21488722 Arabidopsis thaliana
AT5G52980 5.0kb upstream 5.0kb upstream 5000 false Chr5: 21483723-21488722 Arabidopsis thaliana
AT5G52980 5.0kb downstream 5.0kb downstream 6563 true Chr5: 21477160-21483722 Arabidopsis thaliana
AT5G52980 5.0kb downstream 5.0kb downstream 5000 false Chr5: 21477160-21482159 Arabidopsis thaliana
AT5G52980 10.0kb upstream 10.0kb upstream 11563 true Chr5: 21482160-21493722 Arabidopsis thaliana
AT5G52980 10.0kb upstream 10.0kb upstream 10000 false Chr5: 21483723-21493722 Arabidopsis thaliana
AT5G52980 10.0kb downstream 10.0kb downstream 11563 true Chr5: 21472160-21483722 Arabidopsis thaliana
AT5G52980 10.0kb downstream 10.0kb downstream 10000 false Chr5: 21472160-21482159 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122376660 5261 Brassicaceae View MSA
123835410 5264 Brassicales-Malvales View MSA
124340355 5266 SBM View MSA
124239515 5268 Malvidae View MSA
124060420 5270 Rosid View MSA
123736376 5271 Pentapetalae View MSA
122786410 5272 Eudicot View MSA
122047904 5273 Angiosperm View MSA
121346393 5274 Embryophyte View MSA
123426086 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.078        
cufflinks 10.302        
cufflinks 5.86        
cufflinks 10.701       High
cufflinks 5.807        
cufflinks 9.648        

0 Strain