Gene : CSN6A A. thaliana TAIR10
Primary Identifier:  ? AT5G56280 Defline:  (1 of 2) K12179 - COP9 signalosome complex subunit 6 (COPS6, CSN6)
Genomic Order:  5098 Name:  ? AT5G56280
Secondary Identifier:  ? PAC:19672500
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0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G56280 0.5kb upstream 0.5kb upstream 2694 true Chr5: 22783384-22786077 Arabidopsis thaliana
AT5G56280 0.5kb upstream 0.5kb upstream 500 false Chr5: 22785578-22786077 Arabidopsis thaliana
AT5G56280 0.5kb downstream 0.5kb downstream 2694 true Chr5: 22782884-22785577 Arabidopsis thaliana
AT5G56280 0.5kb downstream 0.5kb downstream 500 false Chr5: 22782884-22783383 Arabidopsis thaliana
AT5G56280 1.0kb upstream 1.0kb upstream 3194 true Chr5: 22783384-22786577 Arabidopsis thaliana
AT5G56280 1.0kb upstream 1.0kb upstream 1000 false Chr5: 22785578-22786577 Arabidopsis thaliana
AT5G56280 1.0kb downstream 1.0kb downstream 3194 true Chr5: 22782384-22785577 Arabidopsis thaliana
AT5G56280 1.0kb downstream 1.0kb downstream 1000 false Chr5: 22782384-22783383 Arabidopsis thaliana
AT5G56280 2.0kb upstream 2.0kb upstream 4194 true Chr5: 22783384-22787577 Arabidopsis thaliana
AT5G56280 2.0kb upstream 2.0kb upstream 2000 false Chr5: 22785578-22787577 Arabidopsis thaliana
AT5G56280 2.0kb downstream 2.0kb downstream 4194 true Chr5: 22781384-22785577 Arabidopsis thaliana
AT5G56280 2.0kb downstream 2.0kb downstream 2000 false Chr5: 22781384-22783383 Arabidopsis thaliana
AT5G56280 5.0kb upstream 5.0kb upstream 7194 true Chr5: 22783384-22790577 Arabidopsis thaliana
AT5G56280 5.0kb upstream 5.0kb upstream 5000 false Chr5: 22785578-22790577 Arabidopsis thaliana
AT5G56280 5.0kb downstream 5.0kb downstream 7194 true Chr5: 22778384-22785577 Arabidopsis thaliana
AT5G56280 5.0kb downstream 5.0kb downstream 5000 false Chr5: 22778384-22783383 Arabidopsis thaliana
AT5G56280 10.0kb upstream 10.0kb upstream 12194 true Chr5: 22783384-22795577 Arabidopsis thaliana
AT5G56280 10.0kb upstream 10.0kb upstream 10000 false Chr5: 22785578-22795577 Arabidopsis thaliana
AT5G56280 10.0kb downstream 10.0kb downstream 12194 true Chr5: 22773384-22785577 Arabidopsis thaliana
AT5G56280 10.0kb downstream 10.0kb downstream 10000 false Chr5: 22773384-22783383 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122373100 5261 Brassicaceae View MSA
123827641 5264 Brassicales-Malvales View MSA
124337846 5266 SBM View MSA
124237434 5268 Malvidae View MSA
124066066 5270 Rosid View MSA
123746091 5271 Pentapetalae View MSA
122792490 5272 Eudicot View MSA
122050330 5273 Angiosperm View MSA
121345331 5274 Embryophyte View MSA
123424156 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 13.136        
cufflinks 12.575        
cufflinks 9.928       Low
cufflinks 12.943        
cufflinks 10.74        
cufflinks 14.577       High

0 Strain